Aliases for SSR4P1 Gene

Aliases for SSR4P1 Gene

  • Signal Sequence Receptor Subunit 4 Pseudogene 1 2 3 5
  • Signal Sequence Receptor, Delta Pseudogene 1 2 3
  • PRED57 2 3
  • PRED90 2 3
  • Chromosome 21 Open Reading Frame 122 2
  • C21orf122 3
  • HCG401283 3
  • MGC10960 2
  • SSR4P1 5

External Ids for SSR4P1 Gene

Previous HGNC Symbols for SSR4P1 Gene

  • C21orf122

Previous GeneCards Identifiers for SSR4P1 Gene

  • GC21M046492
  • GC21M046581
  • GC21M046738

Summaries for SSR4P1 Gene

GeneCards Summary for SSR4P1 Gene

SSR4P1 (Signal Sequence Receptor Subunit 4 Pseudogene 1) is a Pseudogene.

Additional gene information for SSR4P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SSR4P1 Gene

Genomics for SSR4P1 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around SSR4P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SSR4P1 Gene

Genomic Locations for SSR4P1 Gene
chr21:45,070,952-45,074,165
(GRCh38/hg38)
Size:
3,214 bases
Orientation:
Minus strand
chr21:46,490,870-46,494,080
(GRCh37/hg19)
Size:
3,211 bases
Orientation:
Minus strand

Genomic View for SSR4P1 Gene

Genes around SSR4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSR4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSR4P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSR4P1 Gene

Proteins for SSR4P1 Gene

Post-translational modifications for SSR4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSR4P1 Gene

Domains & Families for SSR4P1 Gene

Suggested Antigen Peptide Sequences for SSR4P1 Gene

GenScript: Design optimal peptide antigens:
  • PRED57 protein (Q9NSI1_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SSR4P1 Gene

Function for SSR4P1 Gene

Phenotypes From GWAS Catalog for SSR4P1 Gene

Phenotypes for SSR4P1 Gene

genes like me logo Genes that share phenotypes with SSR4P1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSR4P1 Gene

Localization for SSR4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SSR4P1 Gene

Pathways & Interactions for SSR4P1 Gene

PathCards logo

SuperPathways for SSR4P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SSR4P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SSR4P1 Gene

Drugs & Compounds for SSR4P1 Gene

No Compound Related Data Available

Transcripts for SSR4P1 Gene

mRNA/cDNA for SSR4P1 Gene

2 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SSR4P1 Gene

No ASD Table

Relevant External Links for SSR4P1 Gene

GeneLoc Exon Structure for
SSR4P1

Expression for SSR4P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SSR4P1 Gene

mRNA differential expression in normal tissues according to GTEx for SSR4P1 Gene

This gene is overexpressed in Artery - Tibial (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SSR4P1

SOURCE GeneReport for Unigene cluster for SSR4P1 Gene:

Hs.309203
genes like me logo Genes that share expression patterns with SSR4P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSR4P1 Gene

Orthologs for SSR4P1 Gene

Evolution for SSR4P1 Gene

ENSEMBL:
Gene Tree for SSR4P1 (if available)
TreeFam:
Gene Tree for SSR4P1 (if available)

No data available for Orthologs for SSR4P1 Gene

Paralogs for SSR4P1 Gene

No data available for Paralogs for SSR4P1 Gene

Variants for SSR4P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SSR4P1 Gene

Variant ID Type Subtype PubMed ID
nsv834110 CNV loss 17160897

Variation tolerance for SSR4P1 Gene

Gene Damage Index Score: 10.62; 91.33% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SSR4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSR4P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Additional dbSNP identifiers (rs#s) for SSR4P1 Gene

Disorders for SSR4P1 Gene

Additional Disease Information for SSR4P1

No disorders were found for SSR4P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSR4P1 Gene

Publications for SSR4P1 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for SSR4P1 Gene

Sources for SSR4P1 Gene