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Aliases for SSR4P1 Gene

Aliases for SSR4P1 Gene

  • Signal Sequence Receptor Subunit 4 Pseudogene 1 2 3 5
  • Signal Sequence Receptor, Delta Pseudogene 1 2 3
  • Chromosome 21 Open Reading Frame 122 2
  • HCG401283 3
  • C21orf122 3
  • PRED57 3
  • PRED90 3

External Ids for SSR4P1 Gene

Previous HGNC Symbols for SSR4P1 Gene

  • C21orf122

Previous GeneCards Identifiers for SSR4P1 Gene

  • GC21M046492
  • GC21M046581
  • GC21M046738

Summaries for SSR4P1 Gene

GeneCards Summary for SSR4P1 Gene

SSR4P1 (Signal Sequence Receptor Subunit 4 Pseudogene 1) is a Pseudogene.

Additional gene information for SSR4P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSR4P1 Gene

Genomics for SSR4P1 Gene

GeneHancer (GH) Regulatory Elements for SSR4P1 Gene

Promoters and enhancers for SSR4P1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J045070 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 613.5 +0.1 70 6.3 MTA3 ZFX CC2D1A CBFA2T2 ZNF148 NKRF POLR2A MLLT1 ZNF121 GTF2F1 SSR4P1 ADARB1 LOC105372836 ENSG00000184441 POFUT2 UBE2G2 PWP2 COL6A1 LINC00315 ENSG00000224413
GH21J045134 Enhancer 1.3 Ensembl ENCODE dbSUPER 21.3 -63.0 -63035 5.6 ZFX CC2D1A CTCF MYC SP7 PRDM1 RAD21 ARID2 ZBTB8A ZNF600 SSR4P1 ADARB1 ENSG00000228355 MTCO1P3 LINC00334 LINC00205 LINC00315 KRTAP12-4 LOC105372835 GC21M046952
GH21J045128 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -55.9 -55876 3.8 CTCF MAFK MYC SP7 PRDM1 RAD21 SMARCA4 RXRA ZBTB33 ZNF600 ADARB1 SSR4P1 LINC00315 ITGB2 PICSAR LOC105372835 GC21M046952
GH21J045029 Enhancer 0.9 Ensembl ENCODE dbSUPER 22.7 +41.9 41864 6.2 ZBTB5 GABPB1 NR2F2 EZH2 ADARB1 SSR4P1 PICSAR
GH21J045108 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 9.8 -36.9 -36916 4.4 SP1 ZNF148 NKRF ZNF687 RELA CREM MLLT1 EGR1 ZBED1 IKZF1 ITGB2-AS1 SSR4P1 LINC00205 LOC105372835 ADARB1 GC21M046952
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SSR4P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SSR4P1 Gene

Genomic Locations for SSR4P1 Gene
3,214 bases
Minus strand
3,211 bases
Minus strand

Genomic View for SSR4P1 Gene

Genes around SSR4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSR4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSR4P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSR4P1 Gene

Proteins for SSR4P1 Gene

Post-translational modifications for SSR4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSR4P1 Gene

Domains & Families for SSR4P1 Gene

Suggested Antigen Peptide Sequences for SSR4P1 Gene

GenScript: Design optimal peptide antigens:
  • PRED57 protein (Q9NSI1_HUMAN)

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SSR4P1 Gene

Function for SSR4P1 Gene

Phenotypes From GWAS Catalog for SSR4P1 Gene

Phenotypes for SSR4P1 Gene

genes like me logo Genes that share phenotypes with SSR4P1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSR4P1 Gene

Localization for SSR4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SSR4P1 Gene

Pathways & Interactions for SSR4P1 Gene

PathCards logo

SuperPathways for SSR4P1 Gene

No Data Available

Interacting Proteins for SSR4P1 Gene

Gene Ontology (GO) - Biological Process for SSR4P1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SSR4P1 Gene

Drugs & Compounds for SSR4P1 Gene

No Compound Related Data Available

Transcripts for SSR4P1 Gene

mRNA/cDNA for SSR4P1 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for SSR4P1 Gene

Signal sequence receptor, delta pseudogene 1:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SSR4P1 Gene

No ASD Table

Relevant External Links for SSR4P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SSR4P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SSR4P1 Gene

mRNA differential expression in normal tissues according to GTEx for SSR4P1 Gene

This gene is overexpressed in Artery - Tibial (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of SSR4P1 Gene:


SOURCE GeneReport for Unigene cluster for SSR4P1 Gene:

genes like me logo Genes that share expression patterns with SSR4P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSR4P1 Gene

Orthologs for SSR4P1 Gene

Evolution for SSR4P1 Gene

Gene Tree for SSR4P1 (if available)
Gene Tree for SSR4P1 (if available)

No data available for Orthologs for SSR4P1 Gene

Paralogs for SSR4P1 Gene

No data available for Paralogs for SSR4P1 Gene

Variants for SSR4P1 Gene

Sequence variations from dbSNP and Humsavar for SSR4P1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000748770 -- 45,073,425(-) C/A upstream_transcript_variant
rs1000886206 -- 45,073,991(-) GGGGG/GGGG upstream_transcript_variant
rs1002345873 -- 45,073,508(-) G/A upstream_transcript_variant
rs1002515309 -- 45,074,755(-) C/A/G upstream_transcript_variant
rs1002647300 -- 45,071,497(-) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SSR4P1 Gene

Variant ID Type Subtype PubMed ID
nsv834110 CNV loss 17160897

Variation tolerance for SSR4P1 Gene

Gene Damage Index Score: 10.62; 91.33% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SSR4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SSR4P1 Gene

Disorders for SSR4P1 Gene

Additional Disease Information for SSR4P1

No disorders were found for SSR4P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSR4P1 Gene

Publications for SSR4P1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for SSR4P1 Gene

Sources for SSR4P1 Gene

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