Aliases for SSBP3-AS1 Gene

RNA type for SSBP3-AS1 Gene

lncRNA

Aliases for SSBP3-AS1 Gene

External Ids for SSBP3-AS1 Gene

Previous HGNC Symbols for SSBP3-AS1 Gene

  • C1orf191

Previous GeneCards Identifiers for SSBP3-AS1 Gene

  • GC01P054704

Summaries for SSBP3-AS1 Gene

GeneCards Summary for SSBP3-AS1 Gene

SSBP3-AS1 (SSBP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SSBP3-AS1 Gene

Genomics for SSBP3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SSBP3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SSBP3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SSBP3-AS1 Gene

Latest Assembly
chr1:54,236,439-54,239,063
(GRCh38/hg38)
Size:
2,625 bases
Orientation:
Plus strand

Previous Assembly
chr1:54,702,116-54,704,736
(GRCh37/hg19 by Entrez Gene)
Size:
2,621 bases
Orientation:
Plus strand

chr1:54,703,710-54,704,736
(GRCh37/hg19 by Ensembl)
Size:
1,027 bases
Orientation:
Plus strand

Genomic View for SSBP3-AS1 Gene

Genes around SSBP3-AS1 on UCSC Golden Path with GeneCards custom track
SSBP3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SSBP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSBP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSBP3-AS1 Gene

Proteins for SSBP3-AS1 Gene

  • Protein details for SSBP3-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z2R9-SSAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein SSBP3-AS1
    Protein Accession:
    Q7Z2R9

    Protein attributes for SSBP3-AS1 Gene

    Size:
    100 amino acids
    Molecular mass:
    10995 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SSBP3-AS1 Gene

Post-translational modifications for SSBP3-AS1 Gene

  • Glycosylation at Asn64

No data available for DME Specific Peptides for SSBP3-AS1 Gene

Domains & Families for SSBP3-AS1 Gene

Gene Families for SSBP3-AS1 Gene

genes like me logo Genes that share domains with SSBP3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SSBP3-AS1 Gene

Function for SSBP3-AS1 Gene

Phenotypes From GWAS Catalog for SSBP3-AS1 Gene

Phenotypes for SSBP3-AS1 Gene

genes like me logo Genes that share phenotypes with SSBP3-AS1: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSBP3-AS1 Gene

Localization for SSBP3-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SSBP3-AS1 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for SSBP3-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with SSBP3-AS1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SSBP3-AS1 Gene

Pathways & Interactions for SSBP3-AS1 Gene

PathCards logo

SuperPathways for SSBP3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SSBP3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SSBP3-AS1 Gene

Drugs & Compounds for SSBP3-AS1 Gene

No Compound Related Data Available

Transcripts for SSBP3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SSBP3-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075C760_9606 lncRNA 2622 3

RefSeq: NR_103541,

LNCipedia: SSBP3-AS1:2,

NONCODE: NONHSAT003368.2,

URS000077B6D0_9606 lncRNA 2625 2

Ensembl: ENST00000361350 (view in UCSC) ,

LNCipedia: SSBP3-AS1:1,

SSBP3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SSBP3-AS1 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SSBP3-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for SSBP3-AS1 Gene

No ASD Table

Relevant External Links for SSBP3-AS1 Gene

GeneLoc Exon Structure for
SSBP3-AS1

Expression for SSBP3-AS1 Gene

Protein differential expression in normal tissues from HIPED for SSBP3-AS1 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SSBP3-AS1 Gene



Protein tissue co-expression partners for SSBP3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SSBP3-AS1

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSBP3-AS1 Gene

Orthologs for SSBP3-AS1 Gene

Evolution for SSBP3-AS1 Gene

ENSEMBL:
Gene Tree for SSBP3-AS1 (if available)
TreeFam:
Gene Tree for SSBP3-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for SSBP3-AS1

No data available for Orthologs for SSBP3-AS1 Gene

Paralogs for SSBP3-AS1 Gene

No data available for Paralogs for SSBP3-AS1 Gene

Variants for SSBP3-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SSBP3-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Variation tolerance for SSBP3-AS1 Gene

Gene Damage Index Score: 1.87; 35.05% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SSBP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSBP3-AS1
Leiden Open Variation Database (LOVD)
SSBP3-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Structural Variations from Database of Genomic Variants (DGV) for SSBP3-AS1 Gene

Disorders for SSBP3-AS1 Gene

Additional Disease Information for SSBP3-AS1

No disorders were found for SSBP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSBP3-AS1 Gene

Publications for SSBP3-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4

Products for SSBP3-AS1 Gene

Sources for SSBP3-AS1 Gene