Aliases for SSBP3-AS1 Gene

Subcategory (RNA class) for SSBP3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for SSBP3-AS1 Gene

  • SSBP3 Antisense RNA 1 2 3 4 5
  • SSBP3-AS1 2 170
  • C1orf191 3 4
  • Putative Uncharacterized Protein SSBP3-AS1 4
  • Chromosome 1 Open Reading Frame 191 2
  • SSBP3 Antisense Gene Protein 1 4
  • NONHSAG001543 94
  • MSTP128 3
  • MST128 3

External Ids for SSBP3-AS1 Gene

Previous HGNC Symbols for SSBP3-AS1 Gene

  • C1orf191

Previous GeneCards Identifiers for SSBP3-AS1 Gene

  • GC01P054704

Summaries for SSBP3-AS1 Gene

GeneCards Summary for SSBP3-AS1 Gene

SSBP3-AS1 (SSBP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SSBP3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SSBP3-AS1 Gene

Genomics for SSBP3-AS1 Gene

GeneHancer (GH) Regulatory Elements for SSBP3-AS1 Gene

Promoters and enhancers for SSBP3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SSBP3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SSBP3-AS1 Gene

Genomic Locations for SSBP3-AS1 Gene
chr1:54,236,440-54,239,063
(GRCh38/hg38)
Size:
2,624 bases
Orientation:
Plus strand
chr1:54,703,710-54,704,736
(GRCh37/hg19)
Size:
1,027 bases
Orientation:
Plus strand

Genomic View for SSBP3-AS1 Gene

Genes around SSBP3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSBP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSBP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSBP3-AS1 Gene

Proteins for SSBP3-AS1 Gene

  • Protein details for SSBP3-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z2R9-SSAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein SSBP3-AS1
    Protein Accession:
    Q7Z2R9

    Protein attributes for SSBP3-AS1 Gene

    Size:
    100 amino acids
    Molecular mass:
    10995 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SSBP3-AS1 Gene

Post-translational modifications for SSBP3-AS1 Gene

  • Glycosylation at Asn64

No data available for DME Specific Peptides for SSBP3-AS1 Gene

Domains & Families for SSBP3-AS1 Gene

Protein Domains for SSBP3-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with SSBP3-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SSBP3-AS1 Gene

Function for SSBP3-AS1 Gene

Phenotypes From GWAS Catalog for SSBP3-AS1 Gene

Phenotypes for SSBP3-AS1 Gene

genes like me logo Genes that share phenotypes with SSBP3-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SSBP3-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSBP3-AS1 Gene

Localization for SSBP3-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SSBP3-AS1 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for SSBP3-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with SSBP3-AS1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SSBP3-AS1 Gene

Pathways & Interactions for SSBP3-AS1 Gene

PathCards logo

SuperPathways for SSBP3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SSBP3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSBP3-AS1 Gene

Drugs & Compounds for SSBP3-AS1 Gene

No Compound Related Data Available

Transcripts for SSBP3-AS1 Gene

mRNA/cDNA for SSBP3-AS1 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) NONCODE transcripts :
(2) RNACentral transcripts :
(2) LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SSBP3-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for SSBP3-AS1 Gene

No ASD Table

Relevant External Links for SSBP3-AS1 Gene

GeneLoc Exon Structure for
SSBP3-AS1
ECgene alternative splicing isoforms for
SSBP3-AS1

Expression for SSBP3-AS1 Gene

Protein differential expression in normal tissues from HIPED for SSBP3-AS1 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SSBP3-AS1 Gene



Protein tissue co-expression partners for SSBP3-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSBP3-AS1 Gene

Orthologs for SSBP3-AS1 Gene

Evolution for SSBP3-AS1 Gene

ENSEMBL:
Gene Tree for SSBP3-AS1 (if available)
TreeFam:
Gene Tree for SSBP3-AS1 (if available)

No data available for Orthologs for SSBP3-AS1 Gene

Paralogs for SSBP3-AS1 Gene

No data available for Paralogs for SSBP3-AS1 Gene

Variants for SSBP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSBP3-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000725257 -- 54,235,100(+) C/G upstream_transcript_variant
rs1000771610 -- 54,235,362(+) A/G upstream_transcript_variant
rs1000851335 -- 54,235,037(+) G/A upstream_transcript_variant
rs1002729039 -- 54,237,482(+) C/G non_coding_transcript_variant
rs1002780571 -- 54,237,783(+) T/G non_coding_transcript_variant

Variation tolerance for SSBP3-AS1 Gene

Gene Damage Index Score: 1.87; 35.05% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SSBP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSBP3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SSBP3-AS1 Gene

Disorders for SSBP3-AS1 Gene

Additional Disease Information for SSBP3-AS1

No disorders were found for SSBP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSBP3-AS1 Gene

Publications for SSBP3-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 56

Products for SSBP3-AS1 Gene

Sources for SSBP3-AS1 Gene