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Aliases for SSBP3-AS1 Gene

Subcategory (RNA class) for SSBP3-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SSBP3-AS1 Gene

  • SSBP3 Antisense RNA 1 2 3 4 5
  • C1orf191 3 4
  • Chromosome 1 Open Reading Frame 191 2
  • SSBP3 Antisense Gene Protein 1 4
  • MSTP128 3
  • MST128 3

External Ids for SSBP3-AS1 Gene

ORGUL Members for SSBP3-AS1 Gene

Previous HGNC Symbols for SSBP3-AS1 Gene

  • C1orf191

Previous GeneCards Identifiers for SSBP3-AS1 Gene

  • GC01P054704

Summaries for SSBP3-AS1 Gene

GeneCards Summary for SSBP3-AS1 Gene

SSBP3-AS1 (SSBP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for SSBP3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSBP3-AS1 Gene

Genomics for SSBP3-AS1 Gene

GeneHancer (GH) Regulatory Elements for SSBP3-AS1 Gene

Promoters and enhancers for SSBP3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I054051 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 43.9 -183.3 -183286 3.7 DMAP1 YY1 SLC30A9 E2F8 ZNF416 ZNF143 ZNF548 SP3 NFYC SSRP1 TCEANC2 MIR4781 TMEM59 MAGOH NDC1 SSBP3-AS1 HSPB11 LRRC42 PARS2 CYB5RL
GH01I053942 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 43.3 -291.1 -291128 5.4 HDGF SMAD1 ARID4B SIN3A YBX1 FEZF1 ZNF2 YY1 POLR2B ZNF766 HSPB11 LRRC42 MAGOH SSBP3-AS1 NDC1 CYB5RL PARS2 TTC4 TCEANC2 GC01P053939
GH01I053835 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 36.5 -399.3 -399308 4.1 MLX DMAP1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 MEF2D NDC1 MAGOH SSBP3-AS1 HSPB11 LRRC42 ECHDC2 ENSG00000256407 CYB5RL C1orf123 ENSG00000279049
GH01I054882 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 23.2 +649.8 649754 7.8 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ENSG00000233203 DHCR24 ENSG00000242396 SSBP3-AS1 HSPB11 ENSG00000279049 TMEM61 TTC22 PARS2 LRRC42
GH01I054271 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 27.5 +40.1 40101 10.6 HDGF FOXA2 PKNOX1 ARNT FEZF1 ZNF2 YY1 CBX5 ZNF213 E2F8 SSBP3-AS1 ENSG00000256407 SSBP3 TMEM59 HSPB11 CYB5RL NDC1 TCEANC2 ENSG00000237453 TTC22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SSBP3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SSBP3-AS1 Gene

Genomic Locations for SSBP3-AS1 Gene
chr1:54,236,440-54,239,063
(GRCh38/hg38)
Size:
2,624 bases
Orientation:
Plus strand
chr1:54,703,710-54,704,736
(GRCh37/hg19)

Genomic View for SSBP3-AS1 Gene

Genes around SSBP3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSBP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSBP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSBP3-AS1 Gene

Proteins for SSBP3-AS1 Gene

  • Protein details for SSBP3-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z2R9-SSAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein SSBP3-AS1
    Protein Accession:
    Q7Z2R9

    Protein attributes for SSBP3-AS1 Gene

    Size:
    100 amino acids
    Molecular mass:
    10995 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SSBP3-AS1 Gene

Post-translational modifications for SSBP3-AS1 Gene

No data available for DME Specific Peptides for SSBP3-AS1 Gene

Domains & Families for SSBP3-AS1 Gene

Protein Domains for SSBP3-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SSBP3-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSBP3-AS1 Gene

Function for SSBP3-AS1 Gene

Phenotypes From GWAS Catalog for SSBP3-AS1 Gene

Phenotypes for SSBP3-AS1 Gene

GenomeRNAi human phenotypes for SSBP3-AS1:
genes like me logo Genes that share phenotypes with SSBP3-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSBP3-AS1 Gene

Localization for SSBP3-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SSBP3-AS1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SSBP3-AS1 gene
Compartment Confidence
extracellular 3
mitochondrion 3
nucleus 1
cytosol 1

Gene Ontology (GO) - Cellular Components for SSBP3-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with SSBP3-AS1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for SSBP3-AS1 Gene

Pathways & Interactions for SSBP3-AS1 Gene

SuperPathways for SSBP3-AS1 Gene

No Data Available

Interacting Proteins for SSBP3-AS1 Gene

Gene Ontology (GO) - Biological Process for SSBP3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSBP3-AS1 Gene

Drugs & Compounds for SSBP3-AS1 Gene

No Compound Related Data Available

Transcripts for SSBP3-AS1 Gene

mRNA/cDNA for SSBP3-AS1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SSBP3-AS1 Gene

No ASD Table

Relevant External Links for SSBP3-AS1 Gene

GeneLoc Exon Structure for
SSBP3-AS1
ECgene alternative splicing isoforms for
SSBP3-AS1

Expression for SSBP3-AS1 Gene

Protein differential expression in normal tissues from HIPED for SSBP3-AS1 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SSBP3-AS1 Gene



Protein tissue co-expression partners for SSBP3-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSBP3-AS1 Gene

Orthologs for SSBP3-AS1 Gene

Evolution for SSBP3-AS1 Gene

ENSEMBL:
Gene Tree for SSBP3-AS1 (if available)
TreeFam:
Gene Tree for SSBP3-AS1 (if available)

No data available for Orthologs for SSBP3-AS1 Gene

Paralogs for SSBP3-AS1 Gene

No data available for Paralogs for SSBP3-AS1 Gene

Variants for SSBP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SSBP3-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000725257 -- 54,235,100(+) C/G upstream_transcript_variant
rs1000771610 -- 54,235,362(+) A/G upstream_transcript_variant
rs1000851335 -- 54,235,037(+) G/A upstream_transcript_variant
rs1002729039 -- 54,237,482(+) C/G non_coding_transcript_variant
rs1002780571 -- 54,237,783(+) T/G non_coding_transcript_variant

Variation tolerance for SSBP3-AS1 Gene

Gene Damage Index Score: 1.87; 35.05% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SSBP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSBP3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SSBP3-AS1 Gene

Disorders for SSBP3-AS1 Gene

Additional Disease Information for SSBP3-AS1

No disorders were found for SSBP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSBP3-AS1 Gene

Publications for SSBP3-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58

Products for SSBP3-AS1 Gene

Sources for SSBP3-AS1 Gene

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