Aliases for SS18L2P1 Gene

Aliases for SS18L2P1 Gene

  • SS18 Like 2 Pseudogene 1 2 3 5
  • Synovial Sarcoma Translocation Gene On Chromosome 18-Like 2 Pseudogene 1 2 3

External Ids for SS18L2P1 Gene

Previous GeneCards Identifiers for SS18L2P1 Gene

  • GC10P035166

Summaries for SS18L2P1 Gene

GeneCards Summary for SS18L2P1 Gene

SS18L2P1 (SS18 Like 2 Pseudogene 1) is a Pseudogene.

Additional gene information for SS18L2P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SS18L2P1 Gene

Genomics for SS18L2P1 Gene

GeneHancer (GH) Regulatory Elements for SS18L2P1 Gene

Promoters and enhancers for SS18L2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J034861 Enhancer 0.7 Ensembl 0.4 -13.5 -13460 1.4 ZSCAN5C TCF12 ZIC2 TRIM28 KLF7 OSR2 FOXA2 ZBTB17 FOXA1 ZNF335 PARD3 SS18L2P1 piR-32214-048
GH10J034868 Enhancer 0.6 ENCODE 0.4 -5.7 -5735 1.5 NCOR1 SKI ZNF316 MAFF SRF MAFK SMAD4 BCL6 MAFG RARA PARD3 PARD3-AS1 SS18L2P1 piR-32214-048
GH10J034864 Enhancer 0.6 Ensembl 0.4 -11.9 -11860 0.2 ZSCAN5C TCF12 KLF7 OSR2 WT1 GATA3 KLF17 ZSCAN16 PRDM6 KLF1 SS18L2P1 piR-32214-048
GH10J034863 Enhancer 0.5 Ensembl 0.4 -10.9 -10860 1.4 OSR2 NR3C1 ZNF335 PRDM6 FEZF1 GLIS1 ZNF660 ZNF362 PKNOX1 ZNF770 PARD3 SS18L2P1 piR-32214-048
GH10J034867 Enhancer 0.5 Ensembl 0.4 -8.1 -8060 0.2 ZBTB17 ZNF189 PRDM10 EP300 ZNF449 ZBTB8A SS18L2P1 piR-32214-048
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SS18L2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SS18L2P1 Gene

Genomic Locations for SS18L2P1 Gene
chr10:34,875,161-34,876,225
(GRCh38/hg38)
Size:
1,065 bases
Orientation:
Plus strand
chr10:35,164,137-35,165,155
(GRCh37/hg19)
Size:
1,019 bases
Orientation:
Plus strand

Genomic View for SS18L2P1 Gene

Genes around SS18L2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SS18L2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SS18L2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SS18L2P1 Gene

Proteins for SS18L2P1 Gene

Post-translational modifications for SS18L2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SS18L2P1 Gene

Domains & Families for SS18L2P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SS18L2P1 Gene

Function for SS18L2P1 Gene

Phenotypes From GWAS Catalog for SS18L2P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SS18L2P1 Gene

Localization for SS18L2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SS18L2P1 Gene

Pathways & Interactions for SS18L2P1 Gene

PathCards logo

SuperPathways for SS18L2P1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SS18L2P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SS18L2P1 Gene

Drugs & Compounds for SS18L2P1 Gene

No Compound Related Data Available

Transcripts for SS18L2P1 Gene

mRNA/cDNA for SS18L2P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SS18L2P1 Gene

No ASD Table

Relevant External Links for SS18L2P1 Gene

GeneLoc Exon Structure for
SS18L2P1

Expression for SS18L2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SS18L2P1 Gene

genes like me logo Genes that share expression patterns with SS18L2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SS18L2P1 Gene

Orthologs for SS18L2P1 Gene

Evolution for SS18L2P1 Gene

ENSEMBL:
Gene Tree for SS18L2P1 (if available)
TreeFam:
Gene Tree for SS18L2P1 (if available)

No data available for Orthologs for SS18L2P1 Gene

Paralogs for SS18L2P1 Gene

No data available for Paralogs for SS18L2P1 Gene

Variants for SS18L2P1 Gene

Additional Variant Information for SS18L2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SS18L2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SS18L2P1 Gene

Disorders for SS18L2P1 Gene

Additional Disease Information for SS18L2P1

No disorders were found for SS18L2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SS18L2P1 Gene

Publications for SS18L2P1 Gene

No publications were found for SS18L2P1 Gene.

Products for SS18L2P1 Gene

Sources for SS18L2P1 Gene