Aliases for SRP14-AS1 Gene

Data sources for SRP14-AS1 Gene:

RNA type for SRP14-AS1 Gene

lncRNA

Aliases for SRP14-AS1 Gene

External Ids for SRP14-AS1 Gene

Previous GeneCards Identifiers for SRP14-AS1 Gene

  • GC15P040333

Summaries for SRP14-AS1 Gene

GeneCards Summary for SRP14-AS1 Gene

SRP14-AS1 (SRP14 Antisense RNA1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SRP14-AS1 Gene

Genomics for SRP14-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SRP14-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SRP14-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SRP14-AS1 Gene

Latest Assembly
chr15:40,039,242-40,076,539
(GRCh38/hg38)
Size:
37,298 bases
Orientation:
Plus strand

Previous Assembly
chr15:40,331,512-40,359,710
(GRCh37/hg19 by Entrez Gene)
Size:
28,199 bases
Orientation:
Plus strand

chr15:40,331,512-40,359,491
(GRCh37/hg19 by Ensembl)
Size:
27,980 bases
Orientation:
Plus strand

Genomic View for SRP14-AS1 Gene

Genes around SRP14-AS1 on UCSC Golden Path with GeneCards custom track
SRP14-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SRP14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRP14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRP14-AS1 Gene

Proteins for SRP14-AS1 Gene

Post-translational modifications for SRP14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRP14-AS1 Gene

Domains & Families for SRP14-AS1 Gene

Gene Families for SRP14-AS1 Gene

genes like me logo Genes that share domains with SRP14-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SRP14-AS1 Gene

Function for SRP14-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRP14-AS1 Gene

Localization for SRP14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SRP14-AS1 Gene

Pathways & Interactions for SRP14-AS1 Gene

PathCards logo

SuperPathways for SRP14-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SRP14-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SRP14-AS1 Gene

Drugs & Compounds for SRP14-AS1 Gene

No Compound Related Data Available

Transcripts for SRP14-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SRP14-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075A00B_9606 lncRNA 2823 4

RefSeq: NR_040059,

LncBook: HSALNT0218924,

LNCipedia: SRP14-AS1:7,

NONCODE: NONHSAT041794.2,

URS000075DC42_9606 lncRNA 2536 4

RefSeq: NR_040060,

LncBook: HSALNT0218923,

LNCipedia: SRP14-AS1:9,

NONCODE: NONHSAT041796.2,

URS000078041A_9606 lncRNA 669 3

Ensembl: ENST00000560341 (view in UCSC) ,

LncBook: HSALNT0218933,

LNCipedia: SRP14-AS1:13,

URS0000EF6902_9606 lncRNA 2538 1

Ensembl: ENST00000504245 (view in UCSC) ,

URS0000E8534E_9606 lncRNA 1620 1

Ensembl: ENST00000559012 (view in UCSC) ,

SRP14-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SRP14-AS1 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SRP14-AS1 Gene

No ASD Table

Relevant External Links for SRP14-AS1 Gene

GeneLoc Exon Structure for
SRP14-AS1

Expression for SRP14-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SRP14-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SRP14-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SRP14-AS1

genes like me logo Genes that share expression patterns with SRP14-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRP14-AS1 Gene

Orthologs for SRP14-AS1 Gene

Evolution for SRP14-AS1 Gene

ENSEMBL:
Gene Tree for SRP14-AS1 (if available)
TreeFam:
Gene Tree for SRP14-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for SRP14-AS1

No data available for Orthologs for SRP14-AS1 Gene

Paralogs for SRP14-AS1 Gene

No data available for Paralogs for SRP14-AS1 Gene

Variants for SRP14-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SRP14-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SRP14-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2606862 CNV insertion 19546169
esv2749596 CNV deletion 23290073
esv2749598 CNV deletion 23290073
esv3334538 CNV duplication 20981092
esv3581640 CNV loss 25503493
esv3581641 CNV loss 25503493

Additional Variant Information for SRP14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRP14-AS1
Leiden Open Variation Database (LOVD)
SRP14-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SRP14-AS1 Gene

Disorders for SRP14-AS1 Gene

Additional Disease Information for SRP14-AS1

No disorders were found for SRP14-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRP14-AS1 Gene

Publications for SRP14-AS1 Gene

  1. Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma. (PMID: 22327514) Postel-Vinay S … Delattre O (Nature genetics 2012) 3
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for SRP14-AS1 Gene

Sources for SRP14-AS1 Gene