Aliases for SRMP1 Gene

Aliases for SRMP1 Gene

  • SRM Pseudogene 1 2 3 5
  • Spermidine Synthase Pseudogene 1 2 3
  • DJ1057D4.1 2 3
  • SRMP1 5

External Ids for SRMP1 Gene

Previous GeneCards Identifiers for SRMP1 Gene

  • GC20U990222
  • GC20P047126
  • GC20P047174
  • GC20P047175
  • GC20P045921
  • GC20P046488
  • GC20P043232

Summaries for SRMP1 Gene

GeneCards Summary for SRMP1 Gene

SRMP1 (SRM Pseudogene 1) is a Pseudogene.

Additional gene information for SRMP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SRMP1 Gene

Genomics for SRMP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SRMP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J047857 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -1.7 -1707 2.4 CREB1 ZBTB33 ATF7 YBX1 ZNF629 ZNF7 TARDBP PRDM1 PKNOX1 GTF2F1 SRMP1 SULF2 LOC105372636 lnc-NCOA3-4 PREX1
GH20J047860 Enhancer 0.8 ENCODE dbSUPER 600.7 -0.2 -215 0.1 ARID3A YBX1 ZNF7 HES1 SMARCA5 DDX20 ZNF592 SIX4 FOXA1 RFX5 SRMP1 LOC105372636 SULF2 lnc-NCOA3-4 PREX1
GH20J047859 Enhancer 0.7 dbSUPER 600.7 +0.9 944 1.7 ZBTB33 ARID3A HES1 ZNF512B RFX1 ESRRA KLF4 CHD1 ZNF207 GATAD2B SRMP1 SULF2 NCOA3 RNA5SP486 lnc-NCOA3-4 PREX1
GH20J047862 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 +3.5 3499 0.8 ARID3A ATF7 HES1 FOXK2 BMI1 ZKSCAN1 CTBP1 ZSCAN5C CREB1 MLLT1 SRMP1 RNA5SP486 SULF2 lnc-NCOA3-4 PREX1
GH20J047863 Enhancer 0.9 ENCODE dbSUPER 0.7 +4.1 4055 0.2 CREB1 ARID3A ATF7 HES1 FOXK2 BMI1 ZKSCAN1 CTBP1 MLLT1 ZNF207 SRMP1 RNA5SP486 SULF2 lnc-NCOA3-4 PREX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SRMP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SRMP1 Gene

Genomic Locations for SRMP1 Gene
chr20:47,859,717-47,860,959
(GRCh38/hg38)
Size:
1,243 bases
Orientation:
Plus strand
chr20:46,488,460-46,489,693
(GRCh37/hg19)
Size:
1,234 bases
Orientation:
Plus strand

Genomic View for SRMP1 Gene

Genes around SRMP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRMP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRMP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRMP1 Gene

Proteins for SRMP1 Gene

No data available for DME Specific Peptides for SRMP1 Gene

Domains & Families for SRMP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SRMP1 Gene

Function for SRMP1 Gene

Phenotypes From GWAS Catalog for SRMP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRMP1 Gene

Localization for SRMP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SRMP1 Gene

Pathways & Interactions for SRMP1 Gene

PathCards logo

SuperPathways for SRMP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SRMP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SRMP1 Gene

Drugs & Compounds for SRMP1 Gene

No Compound Related Data Available

Transcripts for SRMP1 Gene

mRNA/cDNA for SRMP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SRMP1 Gene

No ASD Table

Relevant External Links for SRMP1 Gene

GeneLoc Exon Structure for
SRMP1

Expression for SRMP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SRMP1 Gene

genes like me logo Genes that share expression patterns with SRMP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRMP1 Gene

Orthologs for SRMP1 Gene

Evolution for SRMP1 Gene

ENSEMBL:
Gene Tree for SRMP1 (if available)
TreeFam:
Gene Tree for SRMP1 (if available)

No data available for Orthologs for SRMP1 Gene

Paralogs for SRMP1 Gene

No data available for Paralogs for SRMP1 Gene

Variants for SRMP1 Gene

Additional Variant Information for SRMP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRMP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SRMP1 Gene

Disorders for SRMP1 Gene

Additional Disease Information for SRMP1

Genetic Association Database
(GAD)

No disorders were found for SRMP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRMP1 Gene

Publications for SRMP1 Gene

  1. Common variation in GPC5 is associated with acquired nephrotic syndrome. (PMID: 21441931) Okamoto K … Noiri E (Nature genetics 2011) 41
  2. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 41
  3. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 41
  4. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang SJ … Fox CS (BMC medical genetics 2007) 41

Products for SRMP1 Gene

Sources for SRMP1 Gene