Aliases for SRI-AS1 Gene

Subcategory (RNA class) for SRI-AS1 Gene

lncRNA

Aliases for SRI-AS1 Gene

  • SRI Antisense RNA 1 2 3

External Ids for SRI-AS1 Gene

Summaries for SRI-AS1 Gene

GeneCards Summary for SRI-AS1 Gene

SRI-AS1 (SRI Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SRI-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SRI-AS1 Gene

Genomics for SRI-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SRI-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J088217 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.7 +2.9 2892 4.1 SP1 CTCF HNRNPL ZNF629 PRDM10 RFX1 SIX5 KDM1A ZNF692 POLR2A SRI ENSG00000228113 lnc-ADAM22-7 ENSG00000254003 SRI-AS1 lnc-STEAP4-2 ADAM22
GH07J088224 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 0.4 +9.3 9282 4.3 CEBPG CREB1 GATAD2A ARID3A TARDBP ZHX2 FOXA1 RFX1 REST SP1 SRI lnc-STEAP4-2 ENSG00000228113 SRI-AS1 lnc-ADAM22-7 ADAM22
GH07J088200 Enhancer 0.7 Ensembl ENCODE 0.4 -15.4 -15359 1.8 ZIC2 DPF2 POLR2A USF1 YY1 MYC NBN SMARCA4 ZNF217 IKZF1 lnc-DBF4-3 SRI ENSG00000254003 SRI-AS1 ADAM22
GH07J088203 Enhancer 0.6 Ensembl 0.4 -14.2 -14159 0.2 BACH1 TCF12 RCOR1 PKNOX1 ZSCAN29 DPF2 POLR2A NBN NR2F1 TBX21 lnc-DBF4-3 ENSG00000254003 SRI-AS1 SRI ADAM22
GH07J088228 Enhancer 0.4 ENCODE 0.4 +12.9 12882 2.1 TRIM28 ATF2 TRIM24 lnc-SRI-1 SRI ENSG00000228113 SRI-AS1 STEAP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SRI-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SRI-AS1 Gene

Genomic Locations for SRI-AS1 Gene
chr7:88,216,660-88,229,768
(GRCh38/hg38)
Size:
13,109 bases
Orientation:
Plus strand

Genomic View for SRI-AS1 Gene

Genes around SRI-AS1 on UCSC Golden Path with GeneCards custom track
SRI-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SRI-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRI-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRI-AS1 Gene

Proteins for SRI-AS1 Gene

Post-translational modifications for SRI-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRI-AS1 Gene

Domains & Families for SRI-AS1 Gene

Gene Families for SRI-AS1 Gene

genes like me logo Genes that share domains with SRI-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SRI-AS1 Gene

Function for SRI-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRI-AS1 Gene

Localization for SRI-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SRI-AS1 Gene

Pathways & Interactions for SRI-AS1 Gene

PathCards logo

SuperPathways for SRI-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SRI-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SRI-AS1 Gene

Drugs & Compounds for SRI-AS1 Gene

No Compound Related Data Available

Transcripts for SRI-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SRI-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B2AD_9606 lncRNA 576 1

RefSeq: NR_120517,

SRI-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SRI-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SRI-AS1 Gene

No ASD Table

Relevant External Links for SRI-AS1 Gene

GeneLoc Exon Structure for
SRI-AS1

Expression for SRI-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRI-AS1 Gene

Orthologs for SRI-AS1 Gene

No data available for Orthologs and Evolution for SRI-AS1 Gene

Paralogs for SRI-AS1 Gene

No data available for Paralogs for SRI-AS1 Gene

Variants for SRI-AS1 Gene

Additional dbSNP identifiers (rs#s) for SRI-AS1 Gene

Additional Variant Information for SRI-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRI-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SRI-AS1 Gene

Disorders for SRI-AS1 Gene

No disorders were found for SRI-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SRI-AS1 Gene

Publications for SRI-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for SRI-AS1 Gene

Products for SRI-AS1 Gene

Sources for SRI-AS1 Gene