Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SRGAP3-AS2 Gene

Subcategory (RNA class) for SRGAP3-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SRGAP3-AS2 Gene

  • SRGAP3 Antisense RNA 2 2 3 5
  • SRGAP3 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for SRGAP3-AS2 Gene

Previous GeneCards Identifiers for SRGAP3-AS2 Gene

  • GC03P009236

Summaries for SRGAP3-AS2 Gene

GeneCards Summary for SRGAP3-AS2 Gene

SRGAP3-AS2 (SRGAP3 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SRGAP3-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRGAP3-AS2 Gene

Genomics for SRGAP3-AS2 Gene

GeneHancer (GH) Regulatory Elements for SRGAP3-AS2 Gene

Promoters and enhancers for SRGAP3-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I009172 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -19.3 -19349 0.9 CTCF TFAP4 FOXA2 NFIB SAP130 MAX RAD21 ZNF507 ZFHX2 GATA3 SRGAP3 SRGAP3-AS2 GC03P009098
GH03I009203 Enhancer 1 ENCODE dbSUPER 0.4 +12.0 12006 1.3 ELF3 FOXA2 ARID4B RAD21 ZNF48 RARA RCOR1 MIXL1 HMG20B SP5 SRGAP3-AS2 SRGAP3-AS3 SRGAP3
GH03I009179 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -12.1 -12092 1.2 IKZF1 IKZF2 RUNX3 GABPA SRGAP3-AS2 GC03P009098 SRGAP3
GH03I009174 Enhancer 0.8 ENCODE dbSUPER 0.4 -17.1 -17097 2 STAT1 NFIB ELF1 SP1 ZNF217 GATA3 CTBP1 RCOR1 SRGAP3-AS2 GC03P009098 SRGAP3
GH03I009166 Enhancer 1 ENCODE dbSUPER 0.3 -23.2 -23242 4.6 HDGF BATF IRF4 RFX5 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 EGR2 SRGAP3 LMCD1-AS1 SRGAP3-AS2 GC03P009098
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SRGAP3-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SRGAP3-AS2 Gene

Genomic Locations for SRGAP3-AS2 Gene
chr3:9,192,493-9,194,453
(GRCh38/hg38)
Size:
1,961 bases
Orientation:
Plus strand
chr3:9,234,177-9,236,137
(GRCh37/hg19)

Genomic View for SRGAP3-AS2 Gene

Genes around SRGAP3-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRGAP3-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRGAP3-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRGAP3-AS2 Gene

Proteins for SRGAP3-AS2 Gene

Post-translational modifications for SRGAP3-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRGAP3-AS2 Gene

Domains & Families for SRGAP3-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRGAP3-AS2 Gene

Function for SRGAP3-AS2 Gene

Phenotypes From GWAS Catalog for SRGAP3-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRGAP3-AS2 Gene

Localization for SRGAP3-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SRGAP3-AS2 Gene

Pathways & Interactions for SRGAP3-AS2 Gene

SuperPathways for SRGAP3-AS2 Gene

No Data Available

Interacting Proteins for SRGAP3-AS2 Gene

Gene Ontology (GO) - Biological Process for SRGAP3-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRGAP3-AS2 Gene

Drugs & Compounds for SRGAP3-AS2 Gene

No Compound Related Data Available

Transcripts for SRGAP3-AS2 Gene

mRNA/cDNA for SRGAP3-AS2 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SRGAP3-AS2 Gene

No ASD Table

Relevant External Links for SRGAP3-AS2 Gene

GeneLoc Exon Structure for
SRGAP3-AS2
ECgene alternative splicing isoforms for
SRGAP3-AS2

Expression for SRGAP3-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SRGAP3-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for SRGAP3-AS2 Gene

This gene is overexpressed in Cervix - Endocervix (x16.1), Fallopian Tube (x15.8), and Lung (x13.0).
genes like me logo Genes that share expression patterns with SRGAP3-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRGAP3-AS2 Gene

Orthologs for SRGAP3-AS2 Gene

Evolution for SRGAP3-AS2 Gene

ENSEMBL:
Gene Tree for SRGAP3-AS2 (if available)
TreeFam:
Gene Tree for SRGAP3-AS2 (if available)

No data available for Orthologs for SRGAP3-AS2 Gene

Paralogs for SRGAP3-AS2 Gene

No data available for Paralogs for SRGAP3-AS2 Gene

Variants for SRGAP3-AS2 Gene

Sequence variations from dbSNP and Humsavar for SRGAP3-AS2 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000544437 -- 9,194,237(+) G/T non_coding_transcript_variant
rs1000687715 -- 9,194,519(+) C/G/T downstream_transcript_variant
rs1000741084 -- 9,194,216(+) A/T non_coding_transcript_variant
rs1001915366 -- 9,194,571(+) A/G downstream_transcript_variant
rs1002481416 -- 9,192,939(+) G/A non_coding_transcript_variant

Additional Variant Information for SRGAP3-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRGAP3-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SRGAP3-AS2 Gene

Disorders for SRGAP3-AS2 Gene

Additional Disease Information for SRGAP3-AS2

No disorders were found for SRGAP3-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRGAP3-AS2 Gene

Publications for SRGAP3-AS2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for SRGAP3-AS2 Gene

Sources for SRGAP3-AS2 Gene

Content
Loading form....