Aliases for SREBF2-AS1 Gene

Subcategory (RNA class) for SREBF2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SREBF2-AS1 Gene

  • SREBF2 Antisense RNA 1 2 3 5
  • SREBF2-AS1 2 168
  • NONHSAG034027 92
  • HSALNG0135666 167
  • 821D11.7 3
  • RP5 3

External Ids for SREBF2-AS1 Gene

Previous GeneCards Identifiers for SREBF2-AS1 Gene

  • GC22M043823
  • GC22M044202
  • GC22M044534
  • GC22M043451

Summaries for SREBF2-AS1 Gene

GeneCards Summary for SREBF2-AS1 Gene

SREBF2-AS1 (SREBF2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SREBF2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SREBF2-AS1 Gene

Genomics for SREBF2-AS1 Gene

GeneHancer (GH) Regulatory Elements for SREBF2-AS1 Gene

Promoters and enhancers for SREBF2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J041831 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.5 1464 4.2 EP300 FOXK2 HNRNPK ZBTB40 ZNF217 SIN3A NRF1 TCF12 POLR2G SP1 SREBF2 SREBF2-AS1 piR-38064 piR-34985 piR-32612 piR-38684 piR-36461 piR-61267 CYP2D8P MEI1
GH22J041835 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 500.7 -1.5 -1534 1.6 SKI POLR2A JUND GATA3 SMAD4 SCRT1 RXRA CEBPB RARA MAX SREBF2-AS1 piR-57460-461 MEI1 CYP2D6 NDUFA6 SREBF2 FJ601684-305
GH22J041856 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 13.3 -25.8 -25835 11.8 CTCF EP300 ZIC2 REST RELA MEF2C RCOR1 RAD21 CTBP1 TRIM22 MEI1 NDUFA6 CENPM CYP2D6 SREBF2 SREBF2-AS1 TNFRSF13C RNU6ATAC22P SMDT1 POLR3H
GH22J041779 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 11.9 +53.2 53223 3.6 ZBTB40 EP300 SP1 POLR2A NFYB ZNF341 TCF12 CBFB CREB3L1 GABPA MEI1 NDUFA6 SREBF2 SREBF2-AS1 RNU6ATAC22P XPNPEP3 CENPM piR-40995 lnc-SNU13-3
GH22J042353 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.6 -519.5 -519532 1.2 ZIC2 GABPA ZBTB17 YY1 POLR2A TCF12 CTCF SCRT1 GLIS1 RAD21 LINC01315 SREBF2-AS1 TCF20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SREBF2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SREBF2-AS1 Gene

Genomic Locations for SREBF2-AS1 Gene
chr22:41,826,201-41,834,666
(GRCh38/hg38)
Size:
8,466 bases
Orientation:
Minus strand
chr22:42,227,219-42,230,669
(GRCh37/hg19)
Size:
3,451 bases
Orientation:
Minus strand

Genomic View for SREBF2-AS1 Gene

Genes around SREBF2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SREBF2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SREBF2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SREBF2-AS1 Gene

Proteins for SREBF2-AS1 Gene

Post-translational modifications for SREBF2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SREBF2-AS1 Gene

Domains & Families for SREBF2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SREBF2-AS1 Gene

Function for SREBF2-AS1 Gene

Phenotypes From GWAS Catalog for SREBF2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SREBF2-AS1 Gene

Localization for SREBF2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SREBF2-AS1 Gene

Pathways & Interactions for SREBF2-AS1 Gene

PathCards logo

SuperPathways for SREBF2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SREBF2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SREBF2-AS1 Gene

Drugs & Compounds for SREBF2-AS1 Gene

No Compound Related Data Available

Transcripts for SREBF2-AS1 Gene

mRNA/cDNA for SREBF2-AS1 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SREBF2-AS1 Gene

No ASD Table

Relevant External Links for SREBF2-AS1 Gene

GeneLoc Exon Structure for
SREBF2-AS1

Expression for SREBF2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SREBF2-AS1 Gene

Orthologs for SREBF2-AS1 Gene

Evolution for SREBF2-AS1 Gene

ENSEMBL:
Gene Tree for SREBF2-AS1 (if available)
TreeFam:
Gene Tree for SREBF2-AS1 (if available)

No data available for Orthologs for SREBF2-AS1 Gene

Paralogs for SREBF2-AS1 Gene

No data available for Paralogs for SREBF2-AS1 Gene

Variants for SREBF2-AS1 Gene

Additional dbSNP identifiers (rs#s) for SREBF2-AS1 Gene

Additional Variant Information for SREBF2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SREBF2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SREBF2-AS1 Gene

Disorders for SREBF2-AS1 Gene

Additional Disease Information for SREBF2-AS1

No disorders were found for SREBF2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SREBF2-AS1 Gene

Publications for SREBF2-AS1 Gene

  1. Long non-coding RNAs RP5-821D11.7, APCDD1L-AS1 and RP11-277P12.9 were associated with the prognosis of lung squamous cell carcinoma. (PMID: 29568882) Luo Y … Wang Z (Molecular medicine reports 2018) 2 3 54
  2. lncRNA RP5-916L7.2 correlates with advanced tumor stage, and promotes cells proliferation while inhibits cells apoptosis through targeting miR-328 and miR-939 in tongue squamous cell carcinoma. (PMID: 30825424) Chen Y … Yan W (Clinical biochemistry 2019) 3 54

Products for SREBF2-AS1 Gene

Sources for SREBF2-AS1 Gene