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Aliases for SRD5A3-AS1 Gene

Subcategory (RNA class) for SRD5A3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SRD5A3-AS1 Gene

  • SRD5A3 Antisense RNA 1 2 3 5
  • SRD5A3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SRD5A3-AS1 Gene

Previous GeneCards Identifiers for SRD5A3-AS1 Gene

  • GC04M056232

Summaries for SRD5A3-AS1 Gene

GeneCards Summary for SRD5A3-AS1 Gene

SRD5A3-AS1 (SRD5A3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SRD5A3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SRD5A3-AS1 Gene

Genomics for SRD5A3-AS1 Gene

GeneHancer (GH) Regulatory Elements for SRD5A3-AS1 Gene

Promoters and enhancers for SRD5A3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I055394 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.4 -1443 4.7 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YBX1 ZNF2 YY1 TMEM165 GC04P055398 SRD5A3-AS1 CEP135 RN7SKP30 CLOCK AASDH SRD5A3 NMU ENSG00000272969
GH04I055357 Enhancer 1.2 Ensembl ENCODE dbSUPER 13 +36.9 36859 2 HDAC1 ZNF366 SCRT2 FOS JUNB CEBPB ZEB2 ATF4 PRDM6 SMARCA4 TMEM165 SRD5A3-AS1 NMU CLOCK PIR32131 SRD5A3 LOC105377659
GH04I055436 Enhancer 1 ENCODE dbSUPER 12.3 -42.5 -42469 2.8 HDAC1 PKNOX1 ATF1 FOXA2 TCF12 CREM ZBTB2 ZEB2 ZNF592 MTA1 RN7SKP30 TMEM165 CLOCK SRD5A3-AS1 PIR52615 GC04M055433 ENSG00000238585 GC04M055502
GH04I055356 Enhancer 0.7 dbSUPER 13 +38.7 38728 1.3 FOXA2 JUN CEBPG FOSL1 FOS GATAD2A FOXA3 CEBPB FOXA1 SKI TMEM165 SRD5A3-AS1 PIR32131 SRD5A3 LOC105377659
GH04I055386 Enhancer 1.2 ENCODE dbSUPER 4.9 +8.6 8607 2.2 PKNOX1 ATF1 ARNT NCOA2 TCF12 ZNF766 GATA2 ZNF143 ATF7 NFYC ENSG00000273257 TMEM165 ENSG00000272969 NMU SRD5A3-AS1 LOC105377659
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SRD5A3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SRD5A3-AS1 Gene

Genomic Locations for SRD5A3-AS1 Gene
chr4:55,363,971-55,395,847
(GRCh38/hg38)
Size:
31,877 bases
Orientation:
Minus strand
chr4:56,230,138-56,262,014
(GRCh37/hg19)

Genomic View for SRD5A3-AS1 Gene

Genes around SRD5A3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SRD5A3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SRD5A3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SRD5A3-AS1 Gene

Proteins for SRD5A3-AS1 Gene

Post-translational modifications for SRD5A3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SRD5A3-AS1 Gene

Domains & Families for SRD5A3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SRD5A3-AS1 Gene

Function for SRD5A3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SRD5A3-AS1 Gene

Localization for SRD5A3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SRD5A3-AS1 Gene

Pathways & Interactions for SRD5A3-AS1 Gene

SuperPathways for SRD5A3-AS1 Gene

No Data Available

Interacting Proteins for SRD5A3-AS1 Gene

Gene Ontology (GO) - Biological Process for SRD5A3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SRD5A3-AS1 Gene

Drugs & Compounds for SRD5A3-AS1 Gene

No Compound Related Data Available

Transcripts for SRD5A3-AS1 Gene

mRNA/cDNA for SRD5A3-AS1 Gene

(3) Additional mRNA sequences :
(27) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SRD5A3-AS1 Gene

SRD5A3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SRD5A3-AS1 Gene

No ASD Table

Relevant External Links for SRD5A3-AS1 Gene

GeneLoc Exon Structure for
SRD5A3-AS1
ECgene alternative splicing isoforms for
SRD5A3-AS1

Expression for SRD5A3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SRD5A3-AS1 Gene

SOURCE GeneReport for Unigene cluster for SRD5A3-AS1 Gene:

Hs.718667
genes like me logo Genes that share expression patterns with SRD5A3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SRD5A3-AS1 Gene

Orthologs for SRD5A3-AS1 Gene

Evolution for SRD5A3-AS1 Gene

ENSEMBL:
Gene Tree for SRD5A3-AS1 (if available)
TreeFam:
Gene Tree for SRD5A3-AS1 (if available)

No data available for Orthologs for SRD5A3-AS1 Gene

Paralogs for SRD5A3-AS1 Gene

No data available for Paralogs for SRD5A3-AS1 Gene

Variants for SRD5A3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SRD5A3-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1047343 uncertain-significance, Congenital disorder of glycosylation 55,371,950(-) C/T intron_variant
rs111238066 uncertain-significance, Congenital disorder of glycosylation 55,371,692(-) G/A intron_variant
rs115046277 uncertain-significance, Congenital disorder of glycosylation 55,371,420(-) T/C intron_variant
rs116416011 uncertain-significance, Congenital disorder of glycosylation 55,370,195(-) T/A intron_variant
rs13149568 benign, Congenital disorder of glycosylation 55,370,412(-) C/T intron_variant

Additional Variant Information for SRD5A3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SRD5A3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SRD5A3-AS1 Gene

Disorders for SRD5A3-AS1 Gene

Additional Disease Information for SRD5A3-AS1

No disorders were found for SRD5A3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SRD5A3-AS1 Gene

Publications for SRD5A3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SRD5A3-AS1 Gene

Sources for SRD5A3-AS1 Gene

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