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Aliases for SPTY2D1OS Gene

Aliases for SPTY2D1OS Gene

  • SPTY2D1 Opposite Strand 2 3 5
  • SPTY2D1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SPTY2D1 Antisense RNA 1 2
  • SPTY2D1-AS1 3

External Ids for SPTY2D1OS Gene

Previous HGNC Symbols for SPTY2D1OS Gene

  • SPTY2D1-AS1

Summaries for SPTY2D1OS Gene

GeneCards Summary for SPTY2D1OS Gene

SPTY2D1OS (SPTY2D1 Opposite Strand) is a Protein Coding gene.

Additional gene information for SPTY2D1OS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPTY2D1OS Gene

Genomics for SPTY2D1OS Gene

GeneHancer (GH) Regulatory Elements for SPTY2D1OS Gene

Promoters and enhancers for SPTY2D1OS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I018587 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 +0.7 692 4.8 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B ZNF143 DEK SPTY2D1OS UEVLD SPTY2D1 LDHC TSG101 SAAL1 GTF2H1 LOC100129966 ENSG00000256361 SERGEF
GH11I018525 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.2 -61.8 -61840 2.7 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B TSG101 GC11P018527 LDHC LDHA GTF2H1 HPS5 SPTY2D1OS LOC100129966 ENSG00000256361
GH11I018720 Enhancer 1 Ensembl ENCODE 9.9 +132.5 132532 2.3 ZNF76 SIN3A RAD21 IRF4 ZNF335 GLIS2 ZNF143 IKZF2 RUNX3 SP3 LOC100129966 SPTY2D1OS ST13P5 LOC105376579 IGSF22
GH11I018670 Enhancer 0.9 Ensembl ENCODE 10.1 +80.7 80716 0.2 SMARCE1 PKNOX1 ETV1 USF2 CEBPG DPF2 E4F1 FOSL1 JUND ZNF316 TMEM86A SPTY2D1 LOC105376579 IGSF22 LOC100129966 SPTY2D1OS LOC100506569
GH11I018524 Enhancer 0.8 FANTOM5 9.9 -64.1 -64093 0.3 ELF3 SOX13 TFAP4 SAP130 ZNF644 RARA NR2F6 THAP11 GATAD2A SOX5 LOC100129966 LDHA GTF2H1 HPS5 SPTY2D1OS LOC105376579 IGSF22 SPTY2D1 TSG101 GC11P018527
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SPTY2D1OS on UCSC Golden Path with GeneCards custom track

Genomic Locations for SPTY2D1OS Gene

Genomic Locations for SPTY2D1OS Gene
chr11:18,588,781-18,610,255
(GRCh38/hg38)
Size:
21,475 bases
Orientation:
Plus strand
chr11:18,621,334-18,631,802
(GRCh37/hg19)

Genomic View for SPTY2D1OS Gene

Genes around SPTY2D1OS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPTY2D1OS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPTY2D1OS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPTY2D1OS Gene

Proteins for SPTY2D1OS Gene

  • Protein details for SPTY2D1OS Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RQQ8
    Recommended name:
    SPTY2D1 opposite strand
    Protein Accession:
    A0A0U1RQQ8

    Protein attributes for SPTY2D1OS Gene

    Size:
    56 amino acids
    Molecular mass:
    6619 Da
    Quaternary structure:
    No Data Available
  • Protein details for SPTY2D1OS Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RQZ7
    Recommended name:
    SPTY2D1 opposite strand
    Protein Accession:
    A0A0U1RQZ7

    Protein attributes for SPTY2D1OS Gene

    Size:
    40 amino acids
    Molecular mass:
    4451 Da
    Quaternary structure:
    No Data Available
  • Protein details for SPTY2D1OS Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RR47
    Recommended name:
    SPTY2D1 opposite strand
    Protein Accession:
    A0A0U1RR47

    Protein attributes for SPTY2D1OS Gene

    Size:
    76 amino acids
    Molecular mass:
    8821 Da
    Quaternary structure:
    No Data Available
  • Protein details for SPTY2D1OS Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RRN3
    Recommended name:
    HCG1992263
    Protein Accession:
    A0A0U1RRN3

    Protein attributes for SPTY2D1OS Gene

    Size:
    59 amino acids
    Molecular mass:
    6977 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPTY2D1OS Gene

Post-translational modifications for SPTY2D1OS Gene

No Post-translational modifications

Other Protein References for SPTY2D1OS Gene

No data available for DME Specific Peptides for SPTY2D1OS Gene

Domains & Families for SPTY2D1OS Gene

Gene Families for SPTY2D1OS Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins
  • Predicted secreted proteins

Protein Domains for SPTY2D1OS Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPTY2D1OS: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPTY2D1OS Gene

Function for SPTY2D1OS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPTY2D1OS Gene

Localization for SPTY2D1OS Gene

Gene Ontology (GO) - Cellular Components for SPTY2D1OS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SPTY2D1OS: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SPTY2D1OS Gene

Pathways & Interactions for SPTY2D1OS Gene

SuperPathways for SPTY2D1OS Gene

No Data Available

Interacting Proteins for SPTY2D1OS Gene

Gene Ontology (GO) - Biological Process for SPTY2D1OS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPTY2D1OS Gene

Drugs & Compounds for SPTY2D1OS Gene

No Compound Related Data Available

Transcripts for SPTY2D1OS Gene

mRNA/cDNA for SPTY2D1OS Gene

(1) REFSEQ mRNAs :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPTY2D1OS Gene

No ASD Table

Relevant External Links for SPTY2D1OS Gene

GeneLoc Exon Structure for
SPTY2D1OS
ECgene alternative splicing isoforms for
SPTY2D1OS

Expression for SPTY2D1OS Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPTY2D1OS Gene

Orthologs for SPTY2D1OS Gene

Evolution for SPTY2D1OS Gene

ENSEMBL:
Gene Tree for SPTY2D1OS (if available)
TreeFam:
Gene Tree for SPTY2D1OS (if available)

No data available for Orthologs for SPTY2D1OS Gene

Paralogs for SPTY2D1OS Gene

No data available for Paralogs for SPTY2D1OS Gene

Variants for SPTY2D1OS Gene

Sequence variations from dbSNP and Humsavar for SPTY2D1OS Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000018382 -- 18,599,636(+) G/A/T upstream_transcript_variant
rs1000525334 -- 18,605,403(+) C/A intron_variant
rs1000583146 -- 18,599,753(+) C/T upstream_transcript_variant
rs1000913555 -- 18,604,401(+) A/T intron_variant
rs1000959804 -- 18,605,698(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SPTY2D1OS Gene

Variant ID Type Subtype PubMed ID
esv2660842 CNV deletion 23128226
esv2761651 CNV loss 21179565
esv3547393 CNV deletion 23714750
esv3625506 CNV loss 21293372
nsv516413 CNV loss 19592680
nsv553633 CNV gain 21841781

Additional Variant Information for SPTY2D1OS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPTY2D1OS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPTY2D1OS Gene

Disorders for SPTY2D1OS Gene

Additional Disease Information for SPTY2D1OS

No disorders were found for SPTY2D1OS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPTY2D1OS Gene

Publications for SPTY2D1OS Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SPTY2D1OS Gene

Sources for SPTY2D1OS Gene

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