Aliases for SPTY2D1OS Gene

Aliases for SPTY2D1OS Gene

  • SPTY2D1 Opposite Strand 2 3 4 5
  • SPTY2D1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Putative Transmembrane Protein SPTY2D1OS 3 4
  • SPTY2D1 Antisense RNA 1 2 4
  • SPTY2D1-AS1 3 4

External Ids for SPTY2D1OS Gene

Previous HGNC Symbols for SPTY2D1OS Gene

  • SPTY2D1-AS1

Summaries for SPTY2D1OS Gene

GeneCards Summary for SPTY2D1OS Gene

SPTY2D1OS (SPTY2D1 Opposite Strand) is a Protein Coding gene.

Additional gene information for SPTY2D1OS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SPTY2D1OS Gene

Genomics for SPTY2D1OS Gene

GeneHancer (GH) Regulatory Elements for SPTY2D1OS Gene

Promoters and enhancers for SPTY2D1OS Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SPTY2D1OS on UCSC Golden Path with GeneCards custom track

Genomic Locations for SPTY2D1OS Gene

Genomic Locations for SPTY2D1OS Gene
chr11:18,588,781-18,610,255
(GRCh38/hg38)
Size:
21,475 bases
Orientation:
Plus strand
chr11:18,621,334-18,631,802
(GRCh37/hg19)
Size:
10,469 bases
Orientation:
Plus strand

Genomic View for SPTY2D1OS Gene

Genes around SPTY2D1OS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPTY2D1OS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPTY2D1OS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPTY2D1OS Gene

Proteins for SPTY2D1OS Gene

  • Protein details for SPTY2D1OS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A0U1RRN3-SPTOS_HUMAN
    Recommended name:
    Putative transmembrane protein SPTY2D1OS
    Protein Accession:
    A0A0U1RRN3

    Protein attributes for SPTY2D1OS Gene

    Size:
    59 amino acids
    Molecular mass:
    6977 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPTY2D1OS Gene

Post-translational modifications for SPTY2D1OS Gene

No Post-translational modifications

Other Protein References for SPTY2D1OS Gene

No data available for DME Specific Peptides for SPTY2D1OS Gene

Domains & Families for SPTY2D1OS Gene

Gene Families for SPTY2D1OS Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins
  • Predicted secreted proteins

Protein Domains for SPTY2D1OS Gene

ProtoNet:
genes like me logo Genes that share domains with SPTY2D1OS: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SPTY2D1OS Gene

Function for SPTY2D1OS Gene

Phenotypes From GWAS Catalog for SPTY2D1OS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPTY2D1OS Gene

Localization for SPTY2D1OS Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPTY2D1OS Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SPTY2D1OS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SPTY2D1OS: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SPTY2D1OS Gene

Pathways & Interactions for SPTY2D1OS Gene

PathCards logo

SuperPathways for SPTY2D1OS Gene

No Data Available

Interacting Proteins for SPTY2D1OS Gene

Gene Ontology (GO) - Biological Process for SPTY2D1OS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPTY2D1OS Gene

Drugs & Compounds for SPTY2D1OS Gene

No Compound Related Data Available

Transcripts for SPTY2D1OS Gene

mRNA/cDNA for SPTY2D1OS Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPTY2D1OS Gene

No ASD Table

Relevant External Links for SPTY2D1OS Gene

GeneLoc Exon Structure for
SPTY2D1OS
ECgene alternative splicing isoforms for
SPTY2D1OS

Expression for SPTY2D1OS Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPTY2D1OS Gene

Orthologs for SPTY2D1OS Gene

Evolution for SPTY2D1OS Gene

ENSEMBL:
Gene Tree for SPTY2D1OS (if available)
TreeFam:
Gene Tree for SPTY2D1OS (if available)

No data available for Orthologs for SPTY2D1OS Gene

Paralogs for SPTY2D1OS Gene

No data available for Paralogs for SPTY2D1OS Gene

Variants for SPTY2D1OS Gene

Sequence variations from dbSNP and Humsavar for SPTY2D1OS Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000018382 -- 18,599,636(+) G/A/T upstream_transcript_variant
rs1000525334 -- 18,605,403(+) C/A genic_downstream_transcript_variant, intron_variant
rs1000583146 -- 18,599,753(+) C/T upstream_transcript_variant
rs1000913555 -- 18,604,401(+) A/T downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000959804 -- 18,605,698(+) T/C genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SPTY2D1OS Gene

Variant ID Type Subtype PubMed ID
esv2660842 CNV deletion 23128226
esv2761651 CNV loss 21179565
esv3547393 CNV deletion 23714750
esv3625506 CNV loss 21293372
nsv516413 CNV loss 19592680
nsv553633 CNV gain 21841781

Additional Variant Information for SPTY2D1OS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPTY2D1OS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPTY2D1OS Gene

Disorders for SPTY2D1OS Gene

Additional Disease Information for SPTY2D1OS

No disorders were found for SPTY2D1OS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPTY2D1OS Gene

Publications for SPTY2D1OS Gene

  1. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor TD … Sakaki Y (Nature 2006) 4 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for SPTY2D1OS Gene

Sources for SPTY2D1OS Gene