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Aliases for SPRNP1 Gene

Aliases for SPRNP1 Gene

  • Shadow Of Prion Protein Pseudogene 1 2 3
  • Shadow Of Prion Protein Homolog (Zebrafish) Pseudogene 1 2

External Ids for SPRNP1 Gene

Previous GeneCards Identifiers for SPRNP1 Gene

  • GC10U901380
  • GC10M128922
  • GC10M135381

Summaries for SPRNP1 Gene

GeneCards Summary for SPRNP1 Gene

SPRNP1 (Shadow Of Prion Protein Pseudogene 1) is a Pseudogene.

Additional gene information for SPRNP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPRNP1 Gene

Genomics for SPRNP1 Gene

Genomic Locations for SPRNP1 Gene

Genomic Locations for SPRNP1 Gene
3,025 bases
Minus strand

Genomic View for SPRNP1 Gene

Genes around SPRNP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPRNP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPRNP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPRNP1 Gene

No data available for GeneHancer (GH) Regulatory Elements for SPRNP1 Gene

Proteins for SPRNP1 Gene

Post-translational modifications for SPRNP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPRNP1 Gene

Domains & Families for SPRNP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPRNP1 Gene

Function for SPRNP1 Gene

Phenotypes for SPRNP1 Gene

GenomeRNAi human phenotypes for SPRNP1:
genes like me logo Genes that share phenotypes with SPRNP1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPRNP1 Gene

Localization for SPRNP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPRNP1 Gene

Pathways & Interactions for SPRNP1 Gene

SuperPathways for SPRNP1 Gene

No Data Available

Interacting Proteins for SPRNP1 Gene

Gene Ontology (GO) - Biological Process for SPRNP1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SPRNP1 Gene

Drugs & Compounds for SPRNP1 Gene

No Compound Related Data Available

Transcripts for SPRNP1 Gene

mRNA/cDNA for SPRNP1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:

Unigene Clusters for SPRNP1 Gene

Shadow of prion protein homolog (zebrafish) pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPRNP1 Gene

No ASD Table

Relevant External Links for SPRNP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SPRNP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPRNP1 Gene

mRNA expression in normal human tissues for SPRNP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SPRNP1 Gene:


SOURCE GeneReport for Unigene cluster for SPRNP1 Gene:

genes like me logo Genes that share expression patterns with SPRNP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPRNP1 Gene

Orthologs for SPRNP1 Gene

No data available for Orthologs and Evolution for SPRNP1 Gene

Paralogs for SPRNP1 Gene

No data available for Paralogs for SPRNP1 Gene

Variants for SPRNP1 Gene

Sequence variations from dbSNP and Humsavar for SPRNP1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1001811851 -- 133,566,580(-) G/A downstream_transcript_variant
rs1003671648 -- 133,568,435(-) C/G/T non_coding_transcript_variant
rs1004001461 -- 133,569,096(-) G/A intron_variant
rs1005352021 -- 133,569,173(-) G/T intron_variant
rs1005613652 -- 133,570,128(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SPRNP1 Gene

Variant ID Type Subtype PubMed ID
esv2760130 CNV gain+loss 21179565
esv2764146 CNV gain+loss 21179565
esv28562 CNV gain+loss 19812545
esv33719 CNV gain 17666407
esv35157 CNV gain 17911159
esv3579237 CNV loss 25503493
esv3891902 CNV gain+loss 25118596
esv3891903 CNV gain 25118596
nsv1043323 CNV gain 25217958
nsv1052904 CNV gain 25217958
nsv1075825 CNV duplication 25765185
esv2759793 CNV gain+loss 17122850
esv2750875 CNV loss 17911159
esv2750853 CNV gain 17911159
esv2419070 CNV deletion 18987734
dgv999n100 CNV gain 25217958
dgv8n64 CNV gain 17921354
dgv37e55 CNV gain 17911159
dgv36e55 CNV gain 17911159
dgv35e55 CNV gain 17911159
dgv305e212 CNV gain 25503493
dgv304e212 CNV gain 25503493
dgv181e199 CNV deletion 23128226
dgv1500n54 CNV loss 21841781
dgv1499n54 CNV loss 21841781
dgv1498n54 CNV gain 21841781
dgv1497n54 CNV loss 21841781
dgv1496n54 CNV gain 21841781
dgv1495n54 CNV gain 21841781
dgv1494n54 CNV gain+loss 21841781
dgv1493n54 CNV gain 21841781
dgv1492n54 CNV loss 21841781
dgv1487n54 CNV gain 21841781
dgv1486n54 CNV gain 21841781
dgv129n27 CNV gain 19166990
dgv128n27 CNV gain 19166990
dgv127n27 CNV gain 19166990
dgv123n27 CNV gain 19166990
dgv1007n100 CNV gain 25217958
dgv1006n100 CNV gain 25217958
dgv1004n100 CNV loss 25217958
dgv1003n100 CNV gain+loss 25217958
dgv1000n100 CNV gain 25217958
nsv952711 CNV deletion 24416366
nsv8752 CNV gain+loss 18304495
nsv832042 CNV gain 17160897
nsv7631 CNV deletion 18451855
nsv552740 CNV loss 21841781
nsv552729 CNV gain 21841781
nsv552726 CNV gain 21841781
nsv552721 CNV gain 21841781
nsv528260 CNV loss 19592680
nsv517180 CNV gain+loss 19592680
nsv498746 CNV loss 21111241
nsv482151 CNV gain 20164927
nsv470981 CNV gain 18288195
nsv469597 CNV gain 16826518
nsv428243 CNV gain 18775914
nsv1159789 CNV duplication 26073780

Additional Variant Information for SPRNP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPRNP1 Gene

Disorders for SPRNP1 Gene

Additional Disease Information for SPRNP1

No disorders were found for SPRNP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPRNP1 Gene

Publications for SPRNP1 Gene

  1. Genomic assessment of the evolution of the prion protein gene family in vertebrates. (PMID: 20206252) Harrison PM … Kumar M (Genomics 2010) 2 3 58
  2. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A … Goate A (American journal of human genetics 2006) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SPRNP1 Gene

Sources for SPRNP1 Gene

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