SPON1-AS1 Gene (RNA Gene)

SPON1 Antisense RNA 1

GC11M014263
GIFtS:
7
See more...

Aliases for SPON1-AS1 Gene

Subcategory (RNA class) for SPON1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SPON1-AS1 Gene

  • SPON1 Antisense RNA 1 2 3 5
  • SPON1-AS1 2 5 165
  • RP11-21 2 3
  • L19.1 2 3
  • NONHSAG007715.2 91
  • HSALNG0082800 164

External Ids for SPON1-AS1 Gene

Summaries for SPON1-AS1 Gene

GeneCards Summary for SPON1-AS1 Gene

SPON1-AS1 (SPON1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SPON1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SPON1-AS1 Gene

Genomics for SPON1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SPON1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J014274 Enhancer 0.3 Ensembl ENCODE 600.7 -1.5 -1524 1.1 SPON1-AS1 L13714-048 RRAS2 SPON1
GH11J014421 Enhancer 1.1 FANTOM5 ENCODE 10.8 -149.5 -149473 3.8 RNF2 TEAD4 PRDM10 ZNF629 IKZF1 ZNF692 JUND ZIC2 ZSCAN4 REST SPON1-AS1 SPON1 COPB1 RRAS2 piR-57176-080 hsa-miR-5095-060
GH11J014307 Enhancer 1 ENCODE dbSUPER 10.2 -38.6 -38645 8.8 CTCF STAT3 PRDM1 RELA RAD21 TCF12 IKZF2 RCOR1 TRIM22 ZNF341 SPON1-AS1 RRAS2 L13714-048 SPON1
GH11J014248 Enhancer 0.8 Ensembl ENCODE 12.1 +24.8 24847 2.1 CTCF TEAD4 FOXA1 PRDM1 ZNF143 REST RAD21 TRIM22 KLF9 ZSCAN5C SPON1-AS1 SPON1 piR-42491-026 RRAS2
GH11J014322 Enhancer 0.9 ENCODE dbSUPER 11 -51.4 -51406 6.2 PRDM10 PRDM1 IKZF2 RELB RUNX3 ASH2L ZNF316 MAFF NBN HDGF L13714-048 SPON1-AS1 RRAS2 SPON1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SPON1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SPON1-AS1 Gene

Genomic Locations for SPON1-AS1 Gene
chr11:14,262,845-14,273,692
(GRCh38/hg38)
Size:
10,848 bases
Orientation:
Minus strand
chr11:14,284,392-14,295,237
(GRCh37/hg19)
Size:
10,846 bases
Orientation:
Minus strand

Genomic View for SPON1-AS1 Gene

Genes around SPON1-AS1 on UCSC Golden Path with GeneCards custom track
SPON1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SPON1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPON1-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for SPON1-AS1 Gene

Proteins for SPON1-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SPON1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPON1-AS1 Gene

Domains & Families for SPON1-AS1 Gene

Gene Families for SPON1-AS1 Gene

HGNC:
genes like me logo Genes that share domains with SPON1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SPON1-AS1 Gene

Function for SPON1-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SPON1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPON1-AS1 Gene

Localization for SPON1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPON1-AS1 Gene

Pathways & Interactions for SPON1-AS1 Gene

PathCards logo

SuperPathways for SPON1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPON1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SPON1-AS1 Gene

Drugs & Compounds for SPON1-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SPON1-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SPON1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000015695_9606 lncRNA 240 4

HGNC: 53117,

Ensembl: ENST00000534587 (view in UCSC) ,

LNCipedia: SPON1-AS1:3,

NONCODE: NONHSAT018122.2,

URS00009C3A1B_9606 lncRNA 240 2

LncBook: HSALNT0172352,

NONCODE: NONHSAT160098.1,

URS0000EA48E4_9606 lncRNA 242 1

LncBook: HSALNT0289403,

SPON1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SPON1-AS1 Gene

No ASD Table

Relevant External Links for SPON1-AS1 Gene

GeneLoc Exon Structure for
SPON1-AS1

No data available for mRNA/cDNA for SPON1-AS1 Gene

Expression for SPON1-AS1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPON1-AS1 Gene

Orthologs for SPON1-AS1 Gene

Evolution for SPON1-AS1 Gene

ENSEMBL:
Gene Tree for SPON1-AS1 (if available)
TreeFam:
Gene Tree for SPON1-AS1 (if available)

No data available for Orthologs for SPON1-AS1 Gene

Paralogs for SPON1-AS1 Gene

No data available for Paralogs for SPON1-AS1 Gene

Variants for SPON1-AS1 Gene

Additional Variant Information for SPON1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPON1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPON1-AS1 Gene

Disorders for SPON1-AS1 Gene

Additional Disease Information for SPON1-AS1

Open Targets Platform

No disorders were found for SPON1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPON1-AS1 Gene

Publications for SPON1-AS1 Gene

  1. Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma. (PMID: 28103885) Zhou M … Sun J (Molecular cancer 2017) 2 3

ExternalLinks

View latest publications for SPON1-AS1 gene in Mastermind

Products for SPON1-AS1 Gene

Sources for SPON1-AS1 Gene