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Aliases for SPON1-AS1 Gene

Subcategory (RNA class) for SPON1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SPON1-AS1 Gene

  • SPON1 Antisense RNA 1 2 3 5
  • RP11-21 3
  • L19.1 3

External Ids for SPON1-AS1 Gene

Summaries for SPON1-AS1 Gene

GeneCards Summary for SPON1-AS1 Gene

SPON1-AS1 (SPON1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SPON1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPON1-AS1 Gene

Genomics for SPON1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SPON1-AS1 Gene

Promoters and enhancers for SPON1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J014274 Enhancer 0.5 Ensembl ENCODE 600.7 -1.9 -1937 1.9 POLR2A SPON1-AS1 RRAS2
GH11J014300 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.6 -27.4 -27410 4.6 CC2D1A CTCF ZSCAN21 PRDM1 ZNF384 RAD21 ARID2 IKZF1 ZNF600 REST SPON1 SPON1-AS1 RRAS2
GH11J014421 Enhancer 1.2 FANTOM5 ENCODE 10.8 -149.5 -149474 3.8 CBFA2T2 ZNF148 MLLT1 MAFK TRIM24 SP7 SMARCA4 POLR2A DPF2 RNF2 SPON1-AS1 SPON1 COPB1 RRAS2 LOC105376670
GH11J014307 Enhancer 1 ENCODE dbSUPER 10.2 -38.6 -38646 8.8 CTCF ZNF121 MAFK SP7 RELA CREM PRDM1 RAD21 IKZF1 PKNOX1 SPON1-AS1 RRAS2
GH11J014248 Enhancer 0.9 Ensembl ENCODE 12.1 +24.9 24946 2.3 CC2D1A CTCF PRDM1 RAD21 PKNOX1 ARID2 ZNF143 REST TRIM22 KLF9 SPON1-AS1 SPON1 RNA5SP332
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SPON1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SPON1-AS1 Gene

Genomic Locations for SPON1-AS1 Gene
chr11:14,262,846-14,273,691
(GRCh38/hg38)
Size:
10,846 bases
Orientation:
Minus strand
chr11:14,284,392-14,295,237
(GRCh37/hg19)
Size:
10,846 bases
Orientation:
Minus strand

Genomic View for SPON1-AS1 Gene

Genes around SPON1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPON1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPON1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SPON1-AS1 Gene

Proteins for SPON1-AS1 Gene

Post-translational modifications for SPON1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPON1-AS1 Gene

Domains & Families for SPON1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPON1-AS1 Gene

Function for SPON1-AS1 Gene

Phenotypes From GWAS Catalog for SPON1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPON1-AS1 Gene

Localization for SPON1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPON1-AS1 Gene

Pathways & Interactions for SPON1-AS1 Gene

PathCards logo

SuperPathways for SPON1-AS1 Gene

No Data Available

Interacting Proteins for SPON1-AS1 Gene

Gene Ontology (GO) - Biological Process for SPON1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPON1-AS1 Gene

Drugs & Compounds for SPON1-AS1 Gene

No Compound Related Data Available

Transcripts for SPON1-AS1 Gene

mRNA/cDNA for SPON1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SPON1-AS1 Gene

No ASD Table

Relevant External Links for SPON1-AS1 Gene

GeneLoc Exon Structure for
SPON1-AS1
ECgene alternative splicing isoforms for
SPON1-AS1

Expression for SPON1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPON1-AS1 Gene

Orthologs for SPON1-AS1 Gene

Evolution for SPON1-AS1 Gene

ENSEMBL:
Gene Tree for SPON1-AS1 (if available)
TreeFam:
Gene Tree for SPON1-AS1 (if available)

No data available for Orthologs for SPON1-AS1 Gene

Paralogs for SPON1-AS1 Gene

No data available for Paralogs for SPON1-AS1 Gene

Variants for SPON1-AS1 Gene

Additional Variant Information for SPON1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPON1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPON1-AS1 Gene

Disorders for SPON1-AS1 Gene

No disorders were found for SPON1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SPON1-AS1 Gene

Publications for SPON1-AS1 Gene

  1. Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma. (PMID: 28103885) Zhou M … Sun J (Molecular cancer 2017) 2 3 58

Products for SPON1-AS1 Gene

Sources for SPON1-AS1 Gene

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