Aliases for SPON1-AS1 Gene

Subcategory (RNA class) for SPON1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for SPON1-AS1 Gene

  • SPON1 Antisense RNA 1 2 3 5
  • SPON1-AS1 2 170
  • NONHSAG007715 94
  • HSALNG0082800 169
  • RP11-21 3
  • L19.1 3

External Ids for SPON1-AS1 Gene

Summaries for SPON1-AS1 Gene

GeneCards Summary for SPON1-AS1 Gene

SPON1-AS1 (SPON1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SPON1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SPON1-AS1 Gene

Genomics for SPON1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SPON1-AS1 Gene

Promoters and enhancers for SPON1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J014274 Enhancer 0.3 Ensembl ENCODE 750.6 -1.5 -1524 1.1 SPON1-AS1 L13714-049
GH11J014421 Enhancer 1.1 FANTOM5 ENCODE 10.8 -149.5 -149473 3.8 SIN3A SMARCE1 DACH1 TEAD4 ZNF148 MAFK MLLT1 CBFA2T2 SP7 SMARCA4 SPON1-AS1 SPON1 COPB1 RRAS2 piR-57176-080 hsa-miR-5095-060
GH11J014307 Enhancer 1 ENCODE dbSUPER 10.2 -38.6 -38645 8.8 CTCF ETV6 RELA RAD21 ZNF121 MAFK SP7 PRDM1 CREM IKZF1 SPON1-AS1 RRAS2 L13714-049
GH11J014322 Enhancer 0.8 ENCODE dbSUPER 11 -51.4 -51406 6.2 ZNF362 MAFK MLLT1 PRDM1 ZBTB33 IKZF1 PRDM10 IKZF2 ZNF316 RUNX3 L13714-049 SPON1-AS1 RRAS2
GH11J014248 Enhancer 0.8 Ensembl ENCODE 12 +24.8 24847 2.1 CTCF CC2D1A RAD21 PRDM1 PKNOX1 ARID2 REST TRIM22 ZNF143 ZSCAN5C SPON1-AS1 SPON1 piR-42491-026
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SPON1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SPON1-AS1 Gene

Genomic Locations for SPON1-AS1 Gene
chr11:14,262,845-14,273,692
(GRCh38/hg38)
Size:
10,848 bases
Orientation:
Minus strand
chr11:14,284,392-14,295,237
(GRCh37/hg19)
Size:
10,846 bases
Orientation:
Minus strand

Genomic View for SPON1-AS1 Gene

Genes around SPON1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPON1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPON1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SPON1-AS1 Gene

Proteins for SPON1-AS1 Gene

Post-translational modifications for SPON1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPON1-AS1 Gene

Domains & Families for SPON1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SPON1-AS1 Gene

Function for SPON1-AS1 Gene

Phenotypes From GWAS Catalog for SPON1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPON1-AS1 Gene

Localization for SPON1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPON1-AS1 Gene

Pathways & Interactions for SPON1-AS1 Gene

PathCards logo

SuperPathways for SPON1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPON1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPON1-AS1 Gene

Drugs & Compounds for SPON1-AS1 Gene

No Compound Related Data Available

Transcripts for SPON1-AS1 Gene

mRNA/cDNA for SPON1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) NONCODE transcripts :
(3) RNACentral transcripts :
(2) LncBook transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SPON1-AS1 Gene

No ASD Table

Relevant External Links for SPON1-AS1 Gene

GeneLoc Exon Structure for
SPON1-AS1
ECgene alternative splicing isoforms for
SPON1-AS1

Expression for SPON1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPON1-AS1 Gene

Orthologs for SPON1-AS1 Gene

Evolution for SPON1-AS1 Gene

ENSEMBL:
Gene Tree for SPON1-AS1 (if available)
TreeFam:
Gene Tree for SPON1-AS1 (if available)

No data available for Orthologs for SPON1-AS1 Gene

Paralogs for SPON1-AS1 Gene

No data available for Paralogs for SPON1-AS1 Gene

Variants for SPON1-AS1 Gene

Additional Variant Information for SPON1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPON1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPON1-AS1 Gene

Disorders for SPON1-AS1 Gene

No disorders were found for SPON1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SPON1-AS1 Gene

Publications for SPON1-AS1 Gene

  1. Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma. (PMID: 28103885) Zhou M … Sun J (Molecular cancer 2017) 2 3 56

Products for SPON1-AS1 Gene

Sources for SPON1-AS1 Gene