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Aliases for SPON1-AS1 Gene
Data sources for SPON1-AS1 Gene:
Subcategory (RNA class) for SPON1-AS1 Gene
lncRNA
Aliases for SPON1-AS1 Gene
- SPON1 Antisense RNA 1 (HGNC, NCBI Entrez Gene, Ensembl)
- SPON1-AS1 (Ensembl, LNCipedia)
- RP11-21 (HGNC, NCBI Entrez Gene)
- L19.1 (HGNC, NCBI Entrez Gene)
- NONHSAG007715.2 (NONCODE)
- HSALNG0082800 (LncBook)
External Ids for SPON1-AS1 Gene
- HGNC: 53117
- NCBI Entrez Gene: 109729138
- Ensembl: ENSG00000254418
Summaries for SPON1-AS1 Gene
GeneCards Summary for SPON1-AS1 Gene
SPON1-AS1 (SPON1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for SPON1-AS1 Gene
- HGNC (53117)
- NCBI Entrez Gene (109729138)
- Ensembl (ENSG00000254418)
- Open Targets Platform(ENSG00000254418)
- Search for SPON1-AS1 at DataMed
- Search for SPON1-AS1 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SPON1-AS1 Gene
Genomics for SPON1-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SPON1-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J014274 | Enhancer | 0.3 | Ensembl ENCODE | 250.7 | -1.0 | -1015 | 1.1 | SPON1-AS1 L13714-048 RRAS2 SPON1 | ||
| GH11J014421 | Enhancer | 1.1 | FANTOM5 ENCODE | 10.8 | -149.0 | -148964 | 3.8 | MNT DEK IKZF1 BHLHE40 ZIC2 SIN3A ZNF395 MAX VEZF1 MAFF | SPON1-AS1 SPON1 COPB1 RRAS2 piR-57176-080 HSALNG0082807 | |
| GH11J014307 | Enhancer | 1.1 | Ensembl ENCODE dbSUPER | 10.2 | -38.1 | -38136 | 8.8 | FEZF1 CTCF TRIM22 ZNF341 SMC3 RAD21 ZNF843 SMARCA5 ZNF316 PRDM6 | SPON1-AS1 RRAS2 L13714-048 HSALNG0082802 SPON1 | |
| GH11J014322 | Enhancer | 0.9 | ENCODE dbSUPER | 11 | -50.9 | -50897 | 6.2 | MAFF ZNF316 PRDM6 ASH2L BATF MAFK ZBTB33 ZNF362 IKZF1 HDGF | L13714-048 SPON1-AS1 RRAS2 HSALNG0082802 SPON1 | |
| GH11J014248 | Enhancer | 0.8 | Ensembl ENCODE | 12 | +25.5 | 25456 | 2.3 | CTCF REST TRIM22 SMC3 RAD21 KLF9 ZNF143 GLIS1 TRIM28 PKNOX1 | SPON1-AS1 SPON1 piR-42491-026 RRAS2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SPON1-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SPON1-AS1 Gene
Latest Assembly
- chr11:14,262,845-14,274,201
- (GRCh38/hg38)
- Size:
- 11,357 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:14,284,392-14,295,237
- (GRCh37/hg19 by Ensembl)
- Size:
- 10,846 bases
- Orientation:
- Minus strand
Genomic View for SPON1-AS1 Gene
Genes around SPON1-AS1 on UCSC Golden Path with GeneCards custom track
SPON1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11p15.2 by HGNC
- 11p15.2 by Entrez Gene
- 11p15.2 by Ensembl
SPON1-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for SPON1-AS1 Gene
Proteins for SPON1-AS1 Gene
Post-translational modifications for SPON1-AS1 Gene
No Post-translational modifications
No data available for DME Specific Peptides for SPON1-AS1 Gene
Domains & Families for SPON1-AS1 Gene
Gene Families for SPON1-AS1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SPON1-AS1 Gene
Function for SPON1-AS1 Gene
Phenotypes From GWAS Catalog for SPON1-AS1 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPON1-AS1 Gene
Localization for SPON1-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPON1-AS1 Gene
Transcripts for SPON1-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SPON1-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000015695_9606 | lncRNA | 240 | 3 |
Ensembl: ENST00000534587 (view in UCSC) , LNCipedia: SPON1-AS1:3, NONCODE: NONHSAT018122.2, |
| URS00009C3A1B_9606 | lncRNA | 240 | 2 |
LncBook: HSALNT0172352, NONCODE: NONHSAT160098.1, |
| URS0001BEC383_9606 | lncRNA | 749 | 1 |
LncBook: HSALNT0172353, |
| URS0000EA48E4_9606 | lncRNA | 242 | 1 |
LncBook: HSALNT0289403, |
SPON1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for SPON1-AS1 Gene
- GeneLoc Exon Structure for
- SPON1-AS1
No data available for mRNA/cDNA for SPON1-AS1 Gene
Expression for SPON1-AS1 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPON1-AS1 Gene
Orthologs for SPON1-AS1 Gene
No data available for Orthologs for SPON1-AS1 Gene
Paralogs for SPON1-AS1 Gene
No data available for Paralogs for SPON1-AS1 Gene
Variants for SPON1-AS1 Gene
Additional Variant Information for SPON1-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SPON1-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPON1-AS1 Gene
Disorders for SPON1-AS1 Gene
Additional Disease Information for SPON1-AS1
- Open Targets Platform
- Open Targets Platform
No disorders were found for SPON1-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPON1-AS1 Gene
Publications for SPON1-AS1 Gene
- Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma. (PMID: 28103885) Zhou M … Sun J (Molecular cancer 2017) 2 3
Products for SPON1-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SPON1-AS1
- Origene Custom Protein Services for SPON1-AS1
- Browse OriGene Inhibitory RNA Products For SPON1-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SPON1-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SPON1-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SPON1-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SPON1-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SPON1-AS1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SPON1-AS1
Sources for SPON1-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB