Aliases for SPINT1-AS1 Gene

Data sources for SPINT1-AS1 Gene:

RNA type for SPINT1-AS1 Gene

lncRNA

Aliases for SPINT1-AS1 Gene

External Ids for SPINT1-AS1 Gene

Summaries for SPINT1-AS1 Gene

GeneCards Summary for SPINT1-AS1 Gene

SPINT1-AS1 (SPINT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SPINT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SPINT1-AS1 Gene

Genomics for SPINT1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SPINT1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J040842 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.0 -1029 6.1 MYC IKZF1 JUND POLR2A ZIC2 CTCF REST ETS1 BHLHE40 TBP SPINT1 SPINT1-AS1 PPP1R14D CCDC32 ZFYVE19 RHOV HSALNG0105299 MN298678-025
GH15J040850 Enhancer 0.7 ENCODE dbSUPER 0.4 -6.1 -6126 1.3 SMAD4 SAP130 RARA TEAD3 TFAP4 RXRB NR2F6 ZNF580 ZNF644 NFIL3 OIP5-AS1 HSALNG0105299 SPINT1 SPINT1-AS1 MN298678-025 RHOV
GH15J040852 Enhancer 0.6 ENCODE dbSUPER 0.4 -7.8 -7791 1.2 FOXA2 SP7 KLF1 ZSCAN4 HSALNG0105299 SPINT1 SPINT1-AS1 MN298678-025 RHOV
GH15J040834 Enhancer 0.5 Ensembl 0.4 +9.4 9371 1.8 CTBP1 TCF7L2 GLIS1 KLF1 FOS SREBF1 HSALNG0105296-001 HSALNG0105296-002 lnc-SPINT1-1 piR-35674-162 ZFYVE19 DNAJC17 RHOV VPS18 ENSG00000251161 GCHFR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SPINT1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SPINT1-AS1 Gene

Latest Assembly
chr15:40,834,731-40,844,872
(GRCh38/hg38)
Size:
10,142 bases
Orientation:
Minus strand

Previous Assembly
chr15:41,128,191-41,136,722
(GRCh37/hg19 by Entrez Gene)
Size:
8,532 bases
Orientation:
Minus strand

chr15:41,128,006-41,136,585
(GRCh37/hg19 by Ensembl)
Size:
8,580 bases
Orientation:
Minus strand

Genomic View for SPINT1-AS1 Gene

Genes around SPINT1-AS1 on UCSC Golden Path with GeneCards custom track
SPINT1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SPINT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPINT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPINT1-AS1 Gene

Proteins for SPINT1-AS1 Gene

Post-translational modifications for SPINT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPINT1-AS1 Gene

Domains & Families for SPINT1-AS1 Gene

Gene Families for SPINT1-AS1 Gene

genes like me logo Genes that share domains with SPINT1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SPINT1-AS1 Gene

Function for SPINT1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPINT1-AS1 Gene

Localization for SPINT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPINT1-AS1 Gene

Pathways & Interactions for SPINT1-AS1 Gene

PathCards logo

SuperPathways for SPINT1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPINT1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SPINT1-AS1 Gene

Drugs & Compounds for SPINT1-AS1 Gene

No Compound Related Data Available

Transcripts for SPINT1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SPINT1-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000380D80_9606 lncRNA 252 4

Ensembl: ENST00000563217 (view in UCSC) ,

LncBook: HSALNT0219108,

LNCipedia: SPINT1-AS1:31,

NONCODE: NONHSAT041888.2,

URS0000012524_9606 lncRNA 643 3

Ensembl: ENST00000564302 (view in UCSC) ,

LNCipedia: SPINT1-AS1:20,

NONCODE: NONHSAT041884.2,

URS00005C692A_9606 lncRNA 631 3

Ensembl: ENST00000565315 (view in UCSC) ,

LNCipedia: SPINT1-AS1:27, SPINT1-AS1:28,

NONCODE: NONHSAT041883.2,

URS00001D7717_9606 lncRNA 629 3

Ensembl: ENST00000568419 (view in UCSC) ,

LNCipedia: SPINT1-AS1:30,

NONCODE: NONHSAT041885.2,

URS000000C822_9606 lncRNA 470 3

Ensembl: ENST00000568525 (view in UCSC) ,

LNCipedia: SPINT1-AS1:29,

NONCODE: NONHSAT041887.2,

SPINT1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SPINT1-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SPINT1-AS1 Gene

No ASD Table

Relevant External Links for SPINT1-AS1 Gene

GeneLoc Exon Structure for
SPINT1-AS1

Expression for SPINT1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SPINT1-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPINT1-AS1 Gene

Orthologs for SPINT1-AS1 Gene

Evolution for SPINT1-AS1 Gene

ENSEMBL:
Gene Tree for SPINT1-AS1 (if available)
TreeFam:
Gene Tree for SPINT1-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for SPINT1-AS1

No data available for Orthologs for SPINT1-AS1 Gene

Paralogs for SPINT1-AS1 Gene

No data available for Paralogs for SPINT1-AS1 Gene

Variants for SPINT1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SPINT1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SPINT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPINT1-AS1
Leiden Open Variation Database (LOVD)
SPINT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPINT1-AS1 Gene

Disorders for SPINT1-AS1 Gene

Additional Disease Information for SPINT1-AS1

No disorders were found for SPINT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPINT1-AS1 Gene

Publications for SPINT1-AS1 Gene

  1. Characterization of long noncoding RNA and messenger RNA signatures in melanoma tumorigenesis and metastasis. (PMID: 28225791) Wang S … Han P (PloS one 2017) 2 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for SPINT1-AS1 Gene

Sources for SPINT1-AS1 Gene