Free for academic non-profit institutions. Other users need a Commercial license
SPATA42 (Spermatogenesis Associated 42) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH01J108856 | Promoter | 0.8 | EPDnew Ensembl | 612.7 | +33.6 | 33551 | 0.8 | ZSCAN4 | SPATA42 GSTM5 lnc-AKNAD1-2 GPSM2 AKNAD1 STXBP3 | |
GH01J108824 | Enhancer | 0.3 | ENCODE | 600.7 | +0.6 | 584 | 0.1 | CTBP1 | SPATA42 AKNAD1 LOC105378891 lnc-AKNAD1-2 GPSM2 STXBP3 | |
GH01J108896 | Enhancer | 0.8 | Ensembl ENCODE | 18 | +73.4 | 73415 | 2.9 | CTCF REST RAD21 TRIM22 RFX5 TFDP1 SMC3 ZNF654 ZNF660 ZBTB33 | SPATA42 AKNAD1 ENSG00000251484 piR-30791-003 GPSM2 MN296835 CLCC1 | |
GH01J108875 | Promoter/Enhancer | 2 | EPDnew Ensembl ENCODE CraniofacialAtlas | 6.5 | +54.2 | 54235 | 3.9 | RNF2 ARHGAP35 CREB1 PRDM10 TFE3 IKZF1 ZNF692 LARP7 PRDM1 MTA2 | GPSM2 PRPF38B PSRC1 SPATA42 CLCC1 piR-30791-003 AKNAD1 | |
GH01J108889 | Enhancer | 0.6 | Ensembl | 20.6 | +65.9 | 65850 | 3.4 | GATAD2A SOX6 EP300 NR2C2 GABPA NR2F2 SAP130 ZNF395 ZNF584 ATF4 | piR-30791-003 SPATA42 AKNAD1 PRPF38B CLCC1 GPSM2 MN296835 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS0000071D11_9606 | lncRNA | 535 | 3 |
Ensembl: ENST00000369989 (view in UCSC) , LNCipedia: SPATA42:1, NONCODE: NONHSAT005003.2, |
URS00001D559B_9606 | lncRNA | 441 | 3 |
Ensembl: ENST00000417241 (view in UCSC) , LncBook: HSALNT0012147, LNCipedia: SPATA42:3, |
URS000075BBB0_9606 | lncRNA | 535 | 2 |
HGNC: 41198, RefSeq: NR_034168, |
URS0000EF2A90_9606 | lncRNA | 472 | 1 |
Ensembl: ENST00000662170 (view in UCSC) , |
URS000075AB99_9606 | lncRNA | 468 | 1 |
RefSeq: NR_049777, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv3587139 | CNV | gain | 21293372 |
esv3587140 | CNV | gain | 21293372 |
nsv1013192 | CNV | gain | 25217958 |
No disorders were found for SPATA42 Gene.
No publications were found for SPATA42 Gene.