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Aliases for SPATA42 Gene
Data sources for SPATA42 Gene:
Subcategory (RNA class) for SPATA42 Gene
lncRNA
Aliases for SPATA42 Gene
- Spermatogenesis Associated 42 (HGNC, NCBI Entrez Gene, Ensembl)
- Spermatogenesis Associated 42 (Non-Protein Coding) (HGNC, NCBI Entrez Gene)
- Spermatogenesis-Related Gene 7 (HGNC, NCBI Entrez Gene)
- AKNAD1 Antisense RNA 1 (HGNC, NCBI Entrez Gene)
- AKNAD1-AS1 (HGNC, NCBI Entrez Gene)
- SPATA42 (Ensembl, LNCipedia)
- SRG7 (HGNC, NCBI Entrez Gene)
- Spermatogenesis-Related Protein 7 (NCBI Entrez Gene)
- NONHSAG002319.2 (NONCODE)
- HSALNG0005835 (LncBook)
External Ids for SPATA42 Gene
- HGNC: 41198
- NCBI Entrez Gene: 642864
- Ensembl: ENSG00000203897
Previous GeneCards Identifiers for SPATA42 Gene
- GC01P109402
- GC01P108857
Summaries for SPATA42 Gene
GeneCards Summary for SPATA42 Gene
SPATA42 (Spermatogenesis Associated 42) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SPATA42 include Spermatogenic Failure, X-Linked, 1.
Additional gene information for SPATA42 Gene
- HGNC (41198)
- NCBI Entrez Gene (642864)
- Ensembl (ENSG00000203897)
- Open Targets Platform(ENSG00000203897)
- Search for SPATA42 at DataMed
- Search for SPATA42 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SPATA42 Gene
Genomics for SPATA42 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SPATA42 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SPATA42 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SPATA42 Gene
Latest Assembly
- chr1:108,813,577-108,860,397
- (GRCh38/hg38)
- Size:
- 46,821 bases
- Orientation:
- Plus strand
Previous Assembly
- chr1:109,399,839-109,401,146
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 1,308 bases
- Orientation:
- Plus strand
- chr1:109,399,839-109,401,146
- (GRCh37/hg19 by Ensembl)
- Size:
- 1,308 bases
- Orientation:
- Plus strand
Genomic View for SPATA42 Gene
Genes around SPATA42 on UCSC Golden Path with GeneCards custom track
SPATA42 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1p13.3 by HGNC
- 1p13.3 by Entrez Gene
- 1p13.3 by Ensembl
SPATA42 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SPATA42 Gene
Proteins for SPATA42 Gene
Post-translational modifications for SPATA42 Gene
No Post-translational modifications
No data available for DME Specific Peptides for SPATA42 Gene
Domains & Families for SPATA42 Gene
Gene Families for SPATA42 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SPATA42 Gene
Function for SPATA42 Gene
Phenotypes From GWAS Catalog for SPATA42 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA42 Gene
Localization for SPATA42 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPATA42 Gene
Transcripts for SPATA42 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SPATA42 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000071D11_9606 | lncRNA | 535 | 3 |
Ensembl: ENST00000369989 (view in UCSC) , LNCipedia: SPATA42:1, NONCODE: NONHSAT005003.2, |
| URS00001D559B_9606 | lncRNA | 443 | 3 |
Ensembl: ENST00000417241 (view in UCSC) , LncBook: HSALNT0012147, LNCipedia: SPATA42:3, |
| URS000075BBB0_9606 | lncRNA | 535 | 1 |
RefSeq: NR_034168, |
| URS0000EF2A90_9606 | lncRNA | 472 | 1 |
Ensembl: ENST00000662170 (view in UCSC) , |
| URS000075AB99_9606 | lncRNA | 468 | 1 |
RefSeq: NR_049777, |
SPATA42 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SPATA42 Gene
- 3 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for SPATA42 Gene
- GeneLoc Exon Structure for
- SPATA42
Expression for SPATA42 Gene
mRNA differential expression in normal tissues according to GTEx for SPATA42 Gene
This gene is overexpressed in Testis (x51.7).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SPATA42
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPATA42 Gene
Orthologs for SPATA42 Gene
No data available for Orthologs for SPATA42 Gene
Paralogs for SPATA42 Gene
No data available for Paralogs for SPATA42 Gene
Variants for SPATA42 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3587139 | CNV | gain | 21293372 |
| esv3587140 | CNV | gain | 21293372 |
| nsv1013192 | CNV | gain | 25217958 |
Additional Variant Information for SPATA42 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SPATA42
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SPATA42 Gene
Disorders for SPATA42 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| spermatogenic failure, x-linked, 1 |
|
|
Search SPATA42 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SPATA42
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for SPATA42 Gene
Publications for SPATA42 Gene
No publications were found for SPATA42 Gene.
ExternalLinks
Products for SPATA42 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SPATA42
- Origene Custom Protein Services for SPATA42
- Browse OriGene Inhibitory RNA Products For SPATA42
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SPATA42
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SPATA42
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SPATA42
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SPATA42
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SPATA42
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SPATA42
Sources for SPATA42 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB