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Aliases for SPATA3-AS1 Gene

Subcategory (RNA class) for SPATA3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPATA3-AS1 Gene

  • SPATA3 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for SPATA3-AS1 Gene

Previous GeneCards Identifiers for SPATA3-AS1 Gene

  • GC02M231851

Summaries for SPATA3-AS1 Gene

GeneCards Summary for SPATA3-AS1 Gene

SPATA3-AS1 (SPATA3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SPATA3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA3-AS1 Gene

Genomics for SPATA3-AS1 Gene

GeneHancer (GH) Regulatory Elements for SPATA3-AS1 Gene

Promoters and enhancers for SPATA3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I230996 Promoter 0.5 EPDnew 550.8 -0.1 -74 0.1 SPATA3 SPATA3-AS1
GH02I230863 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 11.5 +126.4 126421 11.3 PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 IRF4 ZNF143 SP3 ITM2C RPL28P2 NCL ENSG00000261096 COPS7B LINC00471 ENSG00000230385 SPATA3 SPATA3-AS1 PSMD1
GH02I231056 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.6 -62.3 -62295 4.6 FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B PSMD1 HTR2B C2orf72 RPL28P2 DIS3L2 COPS7B NCL SPATA3 SPATA3-AS1 LOC101928816
GH02I230973 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 13 +21.7 21725 2.3 HDGF PKNOX1 SMAD1 BMI1 BATF KLF5 IRF4 ZNF207 ATF7 ETV6 SPATA3 SPATA3-AS1 ENSG00000230385 C2orf72 PSMD1 GPR55
GH02I230924 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 12.1 +70.6 70629 2.5 HDGF PKNOX1 SMAD1 BMI1 BATF IRF4 RAD21 GLIS2 ZNF207 ZNF143 GPR55 ENSG00000283164 SPATA3 SPATA3-AS1 LOC151484 PSMD1 GC02M230912
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SPATA3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SPATA3-AS1 Gene

Genomic Locations for SPATA3-AS1 Gene
chr2:230,984,368-230,996,032
(GRCh38/hg38)
Size:
11,665 bases
Orientation:
Minus strand
chr2:231,849,083-231,860,747
(GRCh37/hg19)

Genomic View for SPATA3-AS1 Gene

Genes around SPATA3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA3-AS1 Gene

Proteins for SPATA3-AS1 Gene

Post-translational modifications for SPATA3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA3-AS1 Gene

Domains & Families for SPATA3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA3-AS1 Gene

Function for SPATA3-AS1 Gene

Phenotypes From GWAS Catalog for SPATA3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA3-AS1 Gene

Localization for SPATA3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPATA3-AS1 Gene

Pathways & Interactions for SPATA3-AS1 Gene

SuperPathways for SPATA3-AS1 Gene

No Data Available

Interacting Proteins for SPATA3-AS1 Gene

Gene Ontology (GO) - Biological Process for SPATA3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPATA3-AS1 Gene

Drugs & Compounds for SPATA3-AS1 Gene

No Compound Related Data Available

Transcripts for SPATA3-AS1 Gene

mRNA/cDNA for SPATA3-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA3-AS1 Gene

No ASD Table

Relevant External Links for SPATA3-AS1 Gene

GeneLoc Exon Structure for
SPATA3-AS1
ECgene alternative splicing isoforms for
SPATA3-AS1

Expression for SPATA3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPATA3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA3-AS1 Gene

This gene is overexpressed in Testis (x39.7).
genes like me logo Genes that share expression patterns with SPATA3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPATA3-AS1 Gene

Orthologs for SPATA3-AS1 Gene

Evolution for SPATA3-AS1 Gene

ENSEMBL:
Gene Tree for SPATA3-AS1 (if available)
TreeFam:
Gene Tree for SPATA3-AS1 (if available)

No data available for Orthologs for SPATA3-AS1 Gene

Paralogs for SPATA3-AS1 Gene

No data available for Paralogs for SPATA3-AS1 Gene

Variants for SPATA3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPATA3-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000375295 -- 230,990,529(-) C/T intron_variant
rs1000427495 -- 230,990,338(-) T/C intron_variant
rs1000490993 -- 230,989,843(-) C/G intron_variant
rs1000800779 -- 230,991,748(-) G/A intron_variant
rs1000981739 -- 230,994,577(-) C/T intron_variant

Additional Variant Information for SPATA3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPATA3-AS1 Gene

Disorders for SPATA3-AS1 Gene

Additional Disease Information for SPATA3-AS1

No disorders were found for SPATA3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA3-AS1 Gene

Publications for SPATA3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58

Products for SPATA3-AS1 Gene

Sources for SPATA3-AS1 Gene

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