Aliases for SPATA20P1 Gene

Aliases for SPATA20P1 Gene

  • Spermatogenesis Associated 20 Pseudogene 1 2 3 5
  • SPATA20P1 5

External Ids for SPATA20P1 Gene

Previous GeneCards Identifiers for SPATA20P1 Gene

  • GC00U931690
  • GC21M039611
  • GC21M039612
  • GC21M039614
  • GC21M039616
  • GC21M039618

Summaries for SPATA20P1 Gene

GeneCards Summary for SPATA20P1 Gene

SPATA20P1 (Spermatogenesis Associated 20 Pseudogene 1) is a Pseudogene.

Additional gene information for SPATA20P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SPATA20P1 Gene

Genomics for SPATA20P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SPATA20P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J038236 Enhancer 0.4 Ensembl dbSUPER 600.7 +1.5 1465 0.8 HLF ENSG00000226012 SPATA20P1 lnc-ETS2-11 lnc-KCNJ6-8 lnc-KCNJ6-9 lnc-ETS2-12 KCNJ15 ERG
GH21J038256 Promoter/Enhancer 1.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.2 -19.9 -19862 3.2 CEBPB SP1 BMI1 FOS FOSL2 BHLHE40 SPI1 MAFK NFE2L2 KCNJ15 LOC105372801 SPATA20P1 lnc-ETS2-10 lnc-ETS2-12 ERG
GH21J038302 Enhancer 1 FANTOM5 ENCODE dbSUPER 4.9 -64.7 -64675 1.5 SP1 JUND CEBPB NR3C1 JUN FOS MAX EP300 FOSL2 MAFK HSALNG0133057 KCNJ15 SPATA20P1 piR-60816-017 ERG
GH21J038244 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.8 -6832 3.4 ZBTB33 YBX1 ZNF512 BACH1 PRDM1 IKZF2 ZNF311 FOXK2 HES1 ZNF512B KCNJ15 SPATA20P1 lnc-ETS2-11 LOC105372801 lnc-ETS2-12 ERG
GH21J038239 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.7 -2.5 -2500 4.3 SP1 SCRT2 RUNX3 SCRT1 KCNJ15 SPATA20P1 lnc-ETS2-11 lnc-ETS2-12 LOC105372801 ERG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SPATA20P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SPATA20P1 Gene

Genomic Locations for SPATA20P1 Gene
chr21:38,238,045-38,238,666
(GRCh38/hg38)
Size:
622 bases
Orientation:
Minus strand
chr21:39,610,149-39,610,586
(GRCh37/hg19)
Size:
438 bases
Orientation:
Minus strand

Genomic View for SPATA20P1 Gene

Genes around SPATA20P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA20P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA20P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA20P1 Gene

Proteins for SPATA20P1 Gene

Post-translational modifications for SPATA20P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA20P1 Gene

Domains & Families for SPATA20P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SPATA20P1 Gene

Function for SPATA20P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA20P1 Gene

Localization for SPATA20P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPATA20P1 Gene

Pathways & Interactions for SPATA20P1 Gene

PathCards logo

SuperPathways for SPATA20P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPATA20P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SPATA20P1 Gene

Drugs & Compounds for SPATA20P1 Gene

No Compound Related Data Available

Transcripts for SPATA20P1 Gene

mRNA/cDNA for SPATA20P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA20P1 Gene

No ASD Table

Relevant External Links for SPATA20P1 Gene

GeneLoc Exon Structure for
SPATA20P1

Expression for SPATA20P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPATA20P1 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA20P1 Gene

This gene is overexpressed in Whole Blood (x25.9).
genes like me logo Genes that share expression patterns with SPATA20P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPATA20P1 Gene

Orthologs for SPATA20P1 Gene

Evolution for SPATA20P1 Gene

ENSEMBL:
Gene Tree for SPATA20P1 (if available)
TreeFam:
Gene Tree for SPATA20P1 (if available)

No data available for Orthologs for SPATA20P1 Gene

Paralogs for SPATA20P1 Gene

No data available for Paralogs for SPATA20P1 Gene

Variants for SPATA20P1 Gene

Additional Variant Information for SPATA20P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA20P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPATA20P1 Gene

Disorders for SPATA20P1 Gene

No disorders were found for SPATA20P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SPATA20P1 Gene

Publications for SPATA20P1 Gene

No publications were found for SPATA20P1 Gene.

No data available for Mastermind for SPATA20P1 Gene

Products for SPATA20P1 Gene

Sources for SPATA20P1 Gene