Aliases for SPATA17-AS1 Gene

Subcategory (RNA class) for SPATA17-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SPATA17-AS1 Gene

  • SPATA17 Antisense RNA 1 2 3 5
  • SPATA17-AS1 2 5 165
  • NONHSAG004294.2 91
  • HSALNG0010573 164

External Ids for SPATA17-AS1 Gene

Previous GeneCards Identifiers for SPATA17-AS1 Gene

  • GC00U935064

Summaries for SPATA17-AS1 Gene

GeneCards Summary for SPATA17-AS1 Gene

SPATA17-AS1 (SPATA17 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SPATA17-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SPATA17-AS1 Gene

Genomics for SPATA17-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SPATA17-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J217839 Enhancer 0.4 UCNEbase 0.4 -13.2 -13156 0.3 EZH2 SPATA17-AS1 lnc-GPATCH2-4 SPATA17 RRP15
GH01J217813 Enhancer 0.3 UCNEbase 0.4 +13.0 12980 0.4 SPATA17-AS1 piR-34974-002 SPATA17 RRP15
GH01J217781 Enhancer 0.4 UCNEbase 0.3 +45.1 45084 0.3 POLR2A SPATA17 SPATA17-AS1 piR-34974-002 RRP15
GH01J217791 Enhancer 0.3 UCNEbase 0.3 +35.1 35088 0.3 SPATA17 SPATA17-AS1 piR-34974-002 RRP15
GH01J217712 Enhancer 0.7 Ensembl 0.1 +113.2 113154 0.6 CEBPG CREB1 ZHX2 FOXA1 ATF7 CEBPB SP1 CTBP1 FOXA2 JUN piR-34974-002 SPATA17 SPATA17-AS1 RRP15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SPATA17-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SPATA17-AS1 Gene

Genomic Locations for SPATA17-AS1 Gene
chr1:217,776,792-217,826,255
(GRCh38/hg38)
Size:
49,464 bases
Orientation:
Minus strand

Genomic View for SPATA17-AS1 Gene

Genes around SPATA17-AS1 on UCSC Golden Path with GeneCards custom track
SPATA17-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SPATA17-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA17-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA17-AS1 Gene

Proteins for SPATA17-AS1 Gene

Post-translational modifications for SPATA17-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA17-AS1 Gene

Domains & Families for SPATA17-AS1 Gene

Gene Families for SPATA17-AS1 Gene

genes like me logo Genes that share domains with SPATA17-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SPATA17-AS1 Gene

Function for SPATA17-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA17-AS1 Gene

Localization for SPATA17-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPATA17-AS1 Gene

Pathways & Interactions for SPATA17-AS1 Gene

PathCards logo

SuperPathways for SPATA17-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPATA17-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SPATA17-AS1 Gene

Drugs & Compounds for SPATA17-AS1 Gene

No Compound Related Data Available

Transcripts for SPATA17-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SPATA17-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004D90E8_9606 lncRNA 420 6

HGNC: 41086,

RefSeq: NR_125784,

Ensembl: ENST00000415765 (view in UCSC) ,

LncBook: HSALNT0021913,

LNCipedia: SPATA17-AS1:2,

NONCODE: NONHSAT009504.2,

URS00008B7EE7_9606 lncRNA 231 3

LncBook: HSALNT0021912,

LNCipedia: SPATA17-AS1:1,

NONCODE: NONHSAT009503.2,

URS00009B2152_9606 lncRNA 667 2

LncBook: HSALNT0021910,

NONCODE: NONHSAT152949.1,

SPATA17-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SPATA17-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA17-AS1 Gene

No ASD Table

Relevant External Links for SPATA17-AS1 Gene

GeneLoc Exon Structure for
SPATA17-AS1

Expression for SPATA17-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPATA17-AS1 Gene

genes like me logo Genes that share expression patterns with SPATA17-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPATA17-AS1 Gene

Orthologs for SPATA17-AS1 Gene

Evolution for SPATA17-AS1 Gene

ENSEMBL:
Gene Tree for SPATA17-AS1 (if available)
TreeFam:
Gene Tree for SPATA17-AS1 (if available)

No data available for Orthologs for SPATA17-AS1 Gene

Paralogs for SPATA17-AS1 Gene

No data available for Paralogs for SPATA17-AS1 Gene

Variants for SPATA17-AS1 Gene

Additional dbSNP identifiers (rs#s) for SPATA17-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SPATA17-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv549217 CNV loss 21841781

Additional Variant Information for SPATA17-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA17-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SPATA17-AS1 Gene

Disorders for SPATA17-AS1 Gene

Additional Disease Information for SPATA17-AS1

No disorders were found for SPATA17-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA17-AS1 Gene

Publications for SPATA17-AS1 Gene

No publications were found for SPATA17-AS1 Gene.

No data available for Mastermind for SPATA17-AS1 Gene

Products for SPATA17-AS1 Gene

Sources for SPATA17-AS1 Gene