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Aliases for SPANXA2-OT1 Gene

Subcategory (RNA class) for SPANXA2-OT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SPANXA2-OT1 Gene

  • SPANXA2 Overlapping Transcript 1 2 3 5
  • SPANXA2 Overlapping Transcript 1 (Non-Protein Coding) 2 3
  • CXorf18 3 4
  • Chromosome X Open Reading Frame 18 2

External Ids for SPANXA2-OT1 Gene

Previous HGNC Symbols for SPANXA2-OT1 Gene

  • CXorf18

Previous GeneCards Identifiers for SPANXA2-OT1 Gene

  • GC0XP140591

Summaries for SPANXA2-OT1 Gene

GeneCards Summary for SPANXA2-OT1 Gene

SPANXA2-OT1 (SPANXA2 Overlapping Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SPANXA2-OT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPANXA2-OT1 Gene

Genomics for SPANXA2-OT1 Gene

GeneHancer (GH) Regulatory Elements for SPANXA2-OT1 Gene

Promoters and enhancers for SPANXA2-OT1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI141468 Enhancer 0.7 Ensembl ENCODE 6.1 -33.7 -33707 1.7 SP1 MAFF JUND JUN FOSL2 SPANXA2-OT1 GC0XP141381
GH0XI141404 Enhancer 0.9 Ensembl ENCODE 0.2 -96.8 -96775 3.2 PKNOX1 JUN SIN3A GATA3 RCOR1 FOSL2 FOS NFE2L2 TCF7L2 CEBPB MAGEC3 GC0XP141381 SPANXA2-OT1
GH0XI141589 Promoter 0.5 EPDnew 0.2 +86.6 86563 0.1 SPANXA2 SPANXA1 SPANXA2-OT1
GH0XI141590 Promoter 0.5 EPDnew 0.2 +86.8 86840 0.1 SPANXA2 GC0XM141597 SPANXA2-OT1
GH0XI141584 Promoter 0.5 EPDnew 0.2 +81.9 81909 0.1 SPANXA1 GC0XM141563 SPANXA2-OT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SPANXA2-OT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SPANXA2-OT1 Gene

Genomic Locations for SPANXA2-OT1 Gene
147,091 bases
Plus strand

Genomic View for SPANXA2-OT1 Gene

Genes around SPANXA2-OT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPANXA2-OT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPANXA2-OT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPANXA2-OT1 Gene

Proteins for SPANXA2-OT1 Gene

  • Protein details for SPANXA2-OT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein SPANXA2-OT1
    Protein Accession:

    Protein attributes for SPANXA2-OT1 Gene

    137 amino acids
    Molecular mass:
    13254 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPANXA2-OT1 Gene

Post-translational modifications for SPANXA2-OT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPANXA2-OT1 Gene

Domains & Families for SPANXA2-OT1 Gene

Protein Domains for SPANXA2-OT1 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPANXA2-OT1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPANXA2-OT1 Gene

Function for SPANXA2-OT1 Gene

Gene Ontology (GO) - Molecular Function for SPANXA2-OT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008017 microtubule binding IBA --
genes like me logo Genes that share ontologies with SPANXA2-OT1: view

Phenotypes for SPANXA2-OT1 Gene

GenomeRNAi human phenotypes for SPANXA2-OT1:
genes like me logo Genes that share phenotypes with SPANXA2-OT1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPANXA2-OT1 Gene

Localization for SPANXA2-OT1 Gene

Gene Ontology (GO) - Cellular Components for SPANXA2-OT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IBA --
genes like me logo Genes that share ontologies with SPANXA2-OT1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SPANXA2-OT1 Gene

Pathways & Interactions for SPANXA2-OT1 Gene

SuperPathways for SPANXA2-OT1 Gene

No Data Available

Interacting Proteins for SPANXA2-OT1 Gene

Gene Ontology (GO) - Biological Process for SPANXA2-OT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007127 NOT meiosis I IBA --
GO:0043065 positive regulation of apoptotic process IBA --
genes like me logo Genes that share ontologies with SPANXA2-OT1: view

No data available for Pathways by source and SIGNOR curated interactions for SPANXA2-OT1 Gene

Drugs & Compounds for SPANXA2-OT1 Gene

No Compound Related Data Available

Transcripts for SPANXA2-OT1 Gene

mRNA/cDNA for SPANXA2-OT1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPANXA2-OT1 Gene

SPANXA2 overlapping transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPANXA2-OT1 Gene

No ASD Table

Relevant External Links for SPANXA2-OT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SPANXA2-OT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPANXA2-OT1 Gene

mRNA differential expression in normal tissues according to GTEx for SPANXA2-OT1 Gene

This gene is overexpressed in Testis (x8.5), Artery - Aorta (x6.9), and Artery - Tibial (x4.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SPANXA2-OT1 Gene

SOURCE GeneReport for Unigene cluster for SPANXA2-OT1 Gene:

genes like me logo Genes that share expression patterns with SPANXA2-OT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPANXA2-OT1 Gene

Orthologs for SPANXA2-OT1 Gene

Evolution for SPANXA2-OT1 Gene

Gene Tree for SPANXA2-OT1 (if available)
Gene Tree for SPANXA2-OT1 (if available)

No data available for Orthologs for SPANXA2-OT1 Gene

Paralogs for SPANXA2-OT1 Gene

(4) SIMAP similar genes for SPANXA2-OT1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPANXA2-OT1: view

No data available for Paralogs for SPANXA2-OT1 Gene

Variants for SPANXA2-OT1 Gene

Sequence variations from dbSNP and Humsavar for SPANXA2-OT1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000027314 -- 141,634,205(+) T/C intron_variant
rs1000144709 -- 141,633,946(+) C/T intron_variant
rs1000225789 -- 141,604,242(+) A/C intron_variant
rs1000341567 -- 141,600,245(+) T/C intron_variant
rs1000390279 -- 141,600,084(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SPANXA2-OT1 Gene

Variant ID Type Subtype PubMed ID
dgv2498e212 CNV gain 25503493
dgv2499e212 CNV loss 25503493
dgv2500e212 CNV gain 25503493
dgv2501e212 CNV loss 25503493
dgv2502e212 CNV gain 25503493
esv23188 CNV loss 19812545
esv26320 CNV gain+loss 19812545
esv2752315 CNV gain 17911159
esv2758896 CNV gain+loss 17122850
esv3574867 CNV loss 25503493
esv3574870 CNV loss 25503493
esv3574874 CNV loss 25503493
esv3574877 CNV loss 25503493
esv3577446 CNV gain 25503493
esv3577447 CNV gain 25503493
nsv1076726 CNV duplication 25765185
nsv1078691 CNV duplication 25765185
nsv1141711 CNV duplication 24896259
nsv1141712 CNV duplication 24896259
nsv1149858 CNV duplication 26484159
nsv469528 CNV loss 16826518
nsv470367 CNV loss 18288195
nsv470369 CNV gain 18288195
nsv470371 CNV gain 18288195
nsv471606 CNV gain 15918152
nsv515177 CNV gain 21397061
nsv516880 CNV gain+loss 19592680
nsv7462 OTHER inversion 18451855
nsv9983 CNV gain 18304495

Additional Variant Information for SPANXA2-OT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPANXA2-OT1 Gene

Disorders for SPANXA2-OT1 Gene

Additional Disease Information for SPANXA2-OT1

No disorders were found for SPANXA2-OT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPANXA2-OT1 Gene

Publications for SPANXA2-OT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for SPANXA2-OT1 Gene

Sources for SPANXA2-OT1 Gene

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