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Aliases for SPAG5-AS1 Gene

Subcategory (RNA class) for SPAG5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SPAG5-AS1 Gene

  • SPAG5 Antisense RNA 1 2 3 5
  • SPAG5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SPAG5-AS1 Gene

Previous GeneCards Identifiers for SPAG5-AS1 Gene

  • GC17P026932
  • GC17P026937

Summaries for SPAG5-AS1 Gene

GeneCards Summary for SPAG5-AS1 Gene

SPAG5-AS1 (SPAG5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SPAG5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPAG5-AS1 Gene

Genomics for SPAG5-AS1 Gene

GeneHancer (GH) Regulatory Elements for SPAG5-AS1 Gene

Promoters and enhancers for SPAG5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I028597 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 +0.2 213 3 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 SPAG5 SPAG5-AS1 NUFIP2 SUPT6H ENSG00000264577 PHF12 SDF2 ENSG00000265908 ITM2BP1 PROCA1
GH17I028660 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.1 +63.6 63635 3.5 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 SUPT6H SDF2 PROCA1 ENSG00000264044 SNORD42A SNORD4B SGK494 SPAG5-AS1 NEK8 TLCD1
GH17I028576 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 12 -21.6 -21588 1.6 HDGF FOXA2 PKNOX1 SMAD1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ALDOC SUPT6H ENSG00000264577 PHF12 NUFIP2 TMEM199 SDF2 SPAG5-AS1 SGK494 RPL23A
GH17I028500 Enhancer 0.9 FANTOM5 ENCODE 11 -97.7 -97660 0.4 BACH1 MAX EBF1 ZIC2 RELA FOXK2 POLR2A ZNF207 ZNF687 NR2F1 UNC119 PIGS SPAG5-AS1 SGK494 SLC46A1 KIAA0100 FOXN1 SPAG5 SEBOX TMEM97
GH17I028494 Enhancer 0.8 ENCODE 11.3 -103.9 -103902 0.2 FOXA2 RB1 ZNF2 RAD21 ARID2 ZNF143 BCLAF1 IKZF2 RUNX3 CREM UNC119 PIGS SPAG5-AS1 SGK494 SLC46A1 FOXN1 SLC13A2 ENSG00000258472
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SPAG5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SPAG5-AS1 Gene

Genomic Locations for SPAG5-AS1 Gene
18,588 bases
Plus strand

Genomic View for SPAG5-AS1 Gene

Genes around SPAG5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPAG5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPAG5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPAG5-AS1 Gene

Proteins for SPAG5-AS1 Gene

Post-translational modifications for SPAG5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPAG5-AS1 Gene

Domains & Families for SPAG5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPAG5-AS1 Gene

Function for SPAG5-AS1 Gene

Phenotypes From GWAS Catalog for SPAG5-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPAG5-AS1 Gene

Localization for SPAG5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPAG5-AS1 Gene

Pathways & Interactions for SPAG5-AS1 Gene

SuperPathways for SPAG5-AS1 Gene

No Data Available

Interacting Proteins for SPAG5-AS1 Gene

Gene Ontology (GO) - Biological Process for SPAG5-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SPAG5-AS1 Gene

Drugs & Compounds for SPAG5-AS1 Gene

No Compound Related Data Available

Transcripts for SPAG5-AS1 Gene

mRNA/cDNA for SPAG5-AS1 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPAG5-AS1 Gene

SPAG5 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPAG5-AS1 Gene

No ASD Table

Relevant External Links for SPAG5-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SPAG5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPAG5-AS1 Gene

SOURCE GeneReport for Unigene cluster for SPAG5-AS1 Gene:

genes like me logo Genes that share expression patterns with SPAG5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPAG5-AS1 Gene

Orthologs for SPAG5-AS1 Gene

Evolution for SPAG5-AS1 Gene

Gene Tree for SPAG5-AS1 (if available)
Gene Tree for SPAG5-AS1 (if available)

No data available for Orthologs for SPAG5-AS1 Gene

Paralogs for SPAG5-AS1 Gene

No data available for Paralogs for SPAG5-AS1 Gene

Variants for SPAG5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPAG5-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000006500 -- 28,597,416(+) T/A upstream_transcript_variant
rs1000204971 -- 28,597,192(+) G/A upstream_transcript_variant
rs1000309994 -- 28,603,985(+) G/T intron_variant
rs1000450802 -- 28,609,748(+) A/G intron_variant
rs1000479887 -- 28,610,299(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SPAG5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1064087 CNV gain 25217958
nsv482200 CNV loss 20164927

Additional Variant Information for SPAG5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPAG5-AS1 Gene

Disorders for SPAG5-AS1 Gene

Additional Disease Information for SPAG5-AS1

No disorders were found for SPAG5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPAG5-AS1 Gene

Publications for SPAG5-AS1 Gene

No publications were found for SPAG5-AS1 Gene.

Products for SPAG5-AS1 Gene

Sources for SPAG5-AS1 Gene

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