SPACA6P-AS Gene (RNA Gene)

SPACA6P Antisense RNA

GC19M051685
GIFtS:
13
See more...

Aliases for SPACA6P-AS Gene

Data sources for SPACA6P-AS Gene:

Subcategory (RNA class) for SPACA6P-AS Gene

lncRNA

Aliases for SPACA6P-AS Gene

External Ids for SPACA6P-AS Gene

Previous HGNC Symbols for SPACA6P-AS Gene

  • LINC01129

Previous GeneCards Identifiers for SPACA6P-AS Gene

  • GC19M052193

Summaries for SPACA6P-AS Gene

GeneCards Summary for SPACA6P-AS Gene

SPACA6P-AS (SPACA6P Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for SPACA6P-AS Gene

Additional gene information for SPACA6P-AS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SPACA6P-AS Gene

Genomics for SPACA6P-AS Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SPACA6P-AS Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SPACA6P-AS on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SPACA6P-AS Gene

Latest Assembly
chr19:51,682,683-51,693,456
(GRCh38/hg38)
Size:
10,774 bases
Orientation:
Minus strand

Previous Assembly
chr19:52,188,616-52,196,709
(GRCh37/hg19 by Entrez Gene)
Size:
8,094 bases
Orientation:
Minus strand

chr19:52,188,616-52,196,709
(GRCh37/hg19 by Ensembl)
Size:
8,094 bases
Orientation:
Minus strand

Genomic View for SPACA6P-AS Gene

Genes around SPACA6P-AS on UCSC Golden Path with GeneCards custom track
SPACA6P-AS in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SPACA6P-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPACA6P-AS Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SPACA6P-AS Gene

Proteins for SPACA6P-AS Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for SPACA6P-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPACA6P-AS Gene

Domains & Families for SPACA6P-AS Gene

Gene Families for SPACA6P-AS Gene

HGNC:
genes like me logo Genes that share domains with SPACA6P-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SPACA6P-AS Gene

Function for SPACA6P-AS Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPACA6P-AS Gene

Localization for SPACA6P-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPACA6P-AS Gene

Pathways & Interactions for SPACA6P-AS Gene

PathCards logo

SuperPathways for SPACA6P-AS Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPACA6P-AS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035195 gene silencing by miRNA IEA --
genes like me logo Genes that share ontologies with SPACA6P-AS: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SPACA6P-AS Gene

Drugs & Compounds for SPACA6P-AS Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for SPACA6P-AS Gene

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  2. miRNA products for research
  3. Inhibitory RNAs for research
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Non-coding RNA (ncRNA) Transcripts from RNAcentral for SPACA6P-AS Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000050347_9606 lncRNA 3964 5

RefSeq: NR_108100,

Ensembl: ENST00000602324 (view in UCSC) ,

LncBook: HSALNT0261772,

LNCipedia: SPACA6P-AS:1,

NONCODE: NONHSAT067460.2,

URS0000D5DE5B_9606 lncRNA 4204 2

LncBook: HSALNT0261770,

LNCipedia: SPACA6P-AS:3,

URS00008B808F_9606 lncRNA 1845 2

LNCipedia: SPACA6P-AS:2,

NONCODE: NONHSAT067461.2,

URS0001BF06FF_9606 lncRNA 6600 1

LncBook: HSALNT0261771,

URS0000D59475_9606 lncRNA 6318 1

LNCipedia: SPACA6P-AS:4,

SPACA6P-AS in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SPACA6P-AS Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SPACA6P-AS Gene

No ASD Table

Relevant External Links for SPACA6P-AS Gene

GeneLoc Exon Structure for
SPACA6P-AS

Expression for SPACA6P-AS Gene

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  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPACA6P-AS Gene

mRNA expression in normal human tissues for SPACA6P-AS Gene
mRNA expression by GTEx for SPACA6P-AS Gene

mRNA differential expression in normal tissues according to GTEx for SPACA6P-AS Gene

This gene is overexpressed in Testis (x5.9) and Adipose - Visceral (Omentum) (x5.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SPACA6P-AS

genes like me logo Genes that share expression patterns with SPACA6P-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPACA6P-AS Gene

Orthologs for SPACA6P-AS Gene

Evolution for SPACA6P-AS Gene

ENSEMBL:
Gene Tree for SPACA6P-AS (if available)
TreeFam:
Gene Tree for SPACA6P-AS (if available)

No data available for Orthologs for SPACA6P-AS Gene

Paralogs for SPACA6P-AS Gene

No data available for Paralogs for SPACA6P-AS Gene

Variants for SPACA6P-AS Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SPACA6P-AS Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SPACA6P-AS Gene

Variant ID Type Subtype PubMed ID
esv2758767 CNV gain+loss 17122850
nsv1140251 OTHER inversion 24896259
nsv953608 CNV deletion 24416366
nsv9742 CNV gain+loss 18304495

Additional Variant Information for SPACA6P-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPACA6P-AS

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SPACA6P-AS Gene

Disorders for SPACA6P-AS Gene

Additional Disease Information for SPACA6P-AS

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for SPACA6P-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPACA6P-AS Gene

Publications for SPACA6P-AS Gene

No publications were found for SPACA6P-AS Gene.

ExternalLinks

View latest publications for SPACA6P-AS gene in Mastermind

Products for SPACA6P-AS Gene

Sources for SPACA6P-AS Gene