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SPACA6P-AS Gene(RNA Gene)

SPACA6P Antisense RNA

GCID:
GC19M051685
GIFtS:
12
Genes Participants
UDN Logo

Aliases for SPACA6P-AS Gene

Subcategory (RNA class) for SPACA6P-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPACA6P-AS Gene

  • SPACA6P Antisense RNA 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1129 2 3
  • LINC01129 3

External Ids for SPACA6P-AS Gene

Previous HGNC Symbols for SPACA6P-AS Gene

  • LINC01129

Previous GeneCards Identifiers for SPACA6P-AS Gene

  • GC19M052193

Summaries for SPACA6P-AS Gene

GeneCards Summary for SPACA6P-AS Gene

SPACA6P-AS (SPACA6P Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SPACA6P-AS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPACA6P-AS Gene

Genomics for SPACA6P-AS Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SPACA6P-AS Gene

Promoters and enhancers for SPACA6P-AS Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19I051393 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE 42.4 +298.4 298409 2.8 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A IRF4 YY1 POLR2B ENSG00000268889 LOC105372446 ZNF841 ZNF766 ZNF577 ZNF616 ZNF175 ZNF836 ZNF432 ZNF614
GH19I052137 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 11.4 -446.2 -446176 3.3 PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B E2F8 ZNF616 ZNF137P ZNF160 ZNF808 ENSG00000268970 ZNF600 ZNF350 ZNF816 ZNF836 ZNF577
GH19I052268 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.4 -576.8 -576775 2.6 HDGF PKNOX1 SMAD1 MLX ARID4B SIN3A DMAP1 YY1 POLR2B E2F8 ZNF766 ZNF701 ZNF600 ZNF808 ENSG00000268970 ENSG00000269001 ZNF137P SPACA6P-AS ZNF160 ZNF816
GH19I052526 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.4 -834.3 -834259 2.4 HDGF ATF1 ARID4B SIN3A YBX1 GLI4 ZNF48 POLR2B CBX5 ZNF416 ZNF808 ZNF611 ZNF613 ZNF137P ZNF701 ENSG00000268970 ENSG00000269001 TPM3P9 ZNF665 ZNF525
GH19I050718 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE 11.4 +974.5 974466 1.6 MXI1 KLF1 KLF17 ZNF335 ZFHX2 GLIS2 POLR2A PATZ1 VEZF1 ZNF143 SHANK1 CLEC11A SPACA6P-AS FUZ SYT3 LRRC4B ASPDH KCNC3 PIR41386
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SPACA6P-AS on UCSC Golden Path with GeneCards custom track

Genomic Locations for SPACA6P-AS Gene

Genomic Locations for SPACA6P-AS Gene
chr19:51,685,363-51,693,456
(GRCh38/hg38)
Size:
8,094 bases
Orientation:
Minus strand
chr19:52,188,616-52,196,709
(GRCh37/hg19)

Genomic View for SPACA6P-AS Gene

Genes around SPACA6P-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPACA6P-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPACA6P-AS Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SPACA6P-AS Gene

Proteins for SPACA6P-AS Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SPACA6P-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPACA6P-AS Gene

Domains & Families for SPACA6P-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPACA6P-AS Gene

Function for SPACA6P-AS Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SPACA6P-AS Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPACA6P-AS Gene

Localization for SPACA6P-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPACA6P-AS Gene

Pathways & Interactions for SPACA6P-AS Gene

SuperPathways for SPACA6P-AS Gene

PathCards logo More details on SuperPathways for SPACA6P-AS
No Data Available

Interacting Proteins for SPACA6P-AS Gene

Gene Ontology (GO) - Biological Process for SPACA6P-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPACA6P-AS Gene

Drugs & Compounds for SPACA6P-AS Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SPACA6P-AS Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SPACA6P-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPACA6P-AS Gene

No ASD Table

Relevant External Links for SPACA6P-AS Gene

GeneLoc Exon Structure for
SPACA6P-AS
ECgene alternative splicing isoforms for
SPACA6P-AS

Expression for SPACA6P-AS Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPACA6P-AS Gene

mRNA expression in normal human tissues for SPACA6P-AS Gene
mRNA expression by GTEx for SPACA6P-AS Gene

mRNA differential expression in normal tissues according to GTEx for SPACA6P-AS Gene

This gene is overexpressed in Testis (x5.9) and Adipose - Visceral (Omentum) (x5.3).
genes like me logo Genes that share expression patterns with SPACA6P-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPACA6P-AS Gene

Orthologs for SPACA6P-AS Gene

Evolution for SPACA6P-AS Gene

ENSEMBL:
Gene Tree for SPACA6P-AS (if available)
TreeFam:
Gene Tree for SPACA6P-AS (if available)

No data available for Orthologs for SPACA6P-AS Gene

Paralogs for SPACA6P-AS Gene

No data available for Paralogs for SPACA6P-AS Gene

Variants for SPACA6P-AS Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SPACA6P-AS Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000093001 -- 51,690,920(-) /A intron_variant
rs1000157128 -- 51,687,100(-) G/C non_coding_transcript_variant
rs1000530637 -- 51,689,380(-) GCAGAGCCGGGG/ intron_variant
rs1000530929 -- 51,692,052(-) G/A intron_variant
rs1000601776 -- 51,689,191(-) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SPACA6P-AS Gene

Variant ID Type Subtype PubMed ID
esv2758767 CNV gain+loss 17122850
nsv1140251 OTHER inversion 24896259
nsv953608 CNV deletion 24416366
nsv9742 CNV gain+loss 18304495

Additional Variant Information for SPACA6P-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPACA6P-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPACA6P-AS Gene

Disorders for SPACA6P-AS Gene

Additional Disease Information for SPACA6P-AS

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SPACA6P-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPACA6P-AS Gene

Publications for SPACA6P-AS Gene

No publications were found for SPACA6P-AS Gene.

Products for SPACA6P-AS Gene

Sources for SPACA6P-AS Gene

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