Aliases for SPACA6P-AS Gene

Data sources for SPACA6P-AS Gene:

Subcategory (RNA class) for SPACA6P-AS Gene

lncRNA

Aliases for SPACA6P-AS Gene

External Ids for SPACA6P-AS Gene

Previous HGNC Symbols for SPACA6P-AS Gene

  • LINC01129

Previous GeneCards Identifiers for SPACA6P-AS Gene

  • GC19M052193

Summaries for SPACA6P-AS Gene

GeneCards Summary for SPACA6P-AS Gene

SPACA6P-AS (SPACA6P Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for SPACA6P-AS Gene

Additional gene information for SPACA6P-AS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SPACA6P-AS Gene

Genomics for SPACA6P-AS Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SPACA6P-AS Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SPACA6P-AS on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SPACA6P-AS Gene

Latest Assembly
chr19:51,682,683-51,693,456
(GRCh38/hg38)
Size:
10,774 bases
Orientation:
Minus strand

Previous Assembly
chr19:52,188,616-52,196,709
(GRCh37/hg19 by Entrez Gene)
Size:
8,094 bases
Orientation:
Minus strand

chr19:52,188,616-52,196,709
(GRCh37/hg19 by Ensembl)
Size:
8,094 bases
Orientation:
Minus strand

Genomic View for SPACA6P-AS Gene

Genes around SPACA6P-AS on UCSC Golden Path with GeneCards custom track
SPACA6P-AS in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SPACA6P-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPACA6P-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPACA6P-AS Gene

Proteins for SPACA6P-AS Gene

Post-translational modifications for SPACA6P-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPACA6P-AS Gene

Domains & Families for SPACA6P-AS Gene

Gene Families for SPACA6P-AS Gene

genes like me logo Genes that share domains with SPACA6P-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SPACA6P-AS Gene

Function for SPACA6P-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPACA6P-AS Gene

Localization for SPACA6P-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPACA6P-AS Gene

Pathways & Interactions for SPACA6P-AS Gene

PathCards logo

SuperPathways for SPACA6P-AS Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPACA6P-AS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035195 gene silencing by miRNA IEA --
genes like me logo Genes that share ontologies with SPACA6P-AS: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SPACA6P-AS Gene

Drugs & Compounds for SPACA6P-AS Gene

No Compound Related Data Available

Transcripts for SPACA6P-AS Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SPACA6P-AS Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000050347_9606 lncRNA 3964 5

RefSeq: NR_108100,

Ensembl: ENST00000602324 (view in UCSC) ,

LncBook: HSALNT0261772,

LNCipedia: SPACA6P-AS:1,

NONCODE: NONHSAT067460.2,

URS0000D5DE5B_9606 lncRNA 4204 2

LncBook: HSALNT0261770,

LNCipedia: SPACA6P-AS:3,

URS00008B808F_9606 lncRNA 1845 2

LNCipedia: SPACA6P-AS:2,

NONCODE: NONHSAT067461.2,

URS0001BF06FF_9606 lncRNA 6600 1

LncBook: HSALNT0261771,

URS0000D59475_9606 lncRNA 6318 1

LNCipedia: SPACA6P-AS:4,

SPACA6P-AS in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SPACA6P-AS Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SPACA6P-AS Gene

No ASD Table

Relevant External Links for SPACA6P-AS Gene

GeneLoc Exon Structure for
SPACA6P-AS

Expression for SPACA6P-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPACA6P-AS Gene

mRNA differential expression in normal tissues according to GTEx for SPACA6P-AS Gene

This gene is overexpressed in Testis (x5.9) and Adipose - Visceral (Omentum) (x5.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SPACA6P-AS

genes like me logo Genes that share expression patterns with SPACA6P-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPACA6P-AS Gene

Orthologs for SPACA6P-AS Gene

Evolution for SPACA6P-AS Gene

ENSEMBL:
Gene Tree for SPACA6P-AS (if available)
TreeFam:
Gene Tree for SPACA6P-AS (if available)

No data available for Orthologs for SPACA6P-AS Gene

Paralogs for SPACA6P-AS Gene

No data available for Paralogs for SPACA6P-AS Gene

Variants for SPACA6P-AS Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SPACA6P-AS Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SPACA6P-AS Gene

Variant ID Type Subtype PubMed ID
esv2758767 CNV gain+loss 17122850
nsv1140251 OTHER inversion 24896259
nsv953608 CNV deletion 24416366
nsv9742 CNV gain+loss 18304495

Additional Variant Information for SPACA6P-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPACA6P-AS

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SPACA6P-AS Gene

Disorders for SPACA6P-AS Gene

Additional Disease Information for SPACA6P-AS

No disorders were found for SPACA6P-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPACA6P-AS Gene

Publications for SPACA6P-AS Gene

No publications were found for SPACA6P-AS Gene.

Products for SPACA6P-AS Gene

Sources for SPACA6P-AS Gene