Aliases for SP2-DT Gene

Data sources for SP2-DT Gene:

RNA type for SP2-DT Gene

lncRNA

Aliases for SP2-DT Gene

External Ids for SP2-DT Gene

Summaries for SP2-DT Gene

GeneCards Summary for SP2-DT Gene

SP2-DT (SP2 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SP2-DT Gene

Genomics for SP2-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SP2-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SP2-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SP2-DT Gene

Latest Assembly
chr17:47,891,228-47,896,317
(GRCh38/hg38)
Size:
5,090 bases
Orientation:
Minus strand

Previous Assembly
chr17:45,968,595-45,973,182
(GRCh37/hg19 by Entrez Gene)
Size:
4,588 bases
Orientation:
Minus strand

chr17:45,968,621-45,973,178
(GRCh37/hg19 by Ensembl)
Size:
4,558 bases
Orientation:
Minus strand

Genomic View for SP2-DT Gene

Genes around SP2-DT on UCSC Golden Path with GeneCards custom track
SP2-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SP2-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SP2-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SP2-DT Gene

Proteins for SP2-DT Gene

Post-translational modifications for SP2-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for SP2-DT Gene

Domains & Families for SP2-DT Gene

Gene Families for SP2-DT Gene

genes like me logo Genes that share domains with SP2-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SP2-DT Gene

Function for SP2-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SP2-DT Gene

Localization for SP2-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SP2-DT Gene

Pathways & Interactions for SP2-DT Gene

PathCards logo

SuperPathways for SP2-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for SP2-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SP2-DT Gene

Drugs & Compounds for SP2-DT Gene

No Compound Related Data Available

Transcripts for SP2-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SP2-DT Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008BECD9_9606 lncRNA 374 3

Ensembl: ENST00000577279 (view in UCSC) ,

LncBook: HSALNT0241781,

LNCipedia: SP2-AS1:15,

URS0000A771EC_9606 lncRNA 525 1

RefSeq: NR_135480,

URS0000EF2B8B_9606 lncRNA 522 1

Ensembl: ENST00000582787 (view in UCSC) ,

URS00008B9C69_9606 lncRNA 3939 3

LncBook: HSALNT0241790,

LNCipedia: SP2-AS1:14,

NONCODE: NONHSAT054341.2,

URS00008C396D_9606 lncRNA 964 3

LncBook: HSALNT0241787,

LNCipedia: SP2-AS1:10,

NONCODE: NONHSAT054339.2,

SP2-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SP2-DT Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SP2-DT Gene

No ASD Table

Relevant External Links for SP2-DT Gene

GeneLoc Exon Structure for
SP2-DT

Expression for SP2-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SP2-DT Gene

Orthologs for SP2-DT Gene

Evolution for SP2-DT Gene

ENSEMBL:
Gene Tree for SP2-DT (if available)
TreeFam:
Gene Tree for SP2-DT (if available)
Alliance of Genome Resources:
Additional Orthologs for SP2-DT

No data available for Orthologs for SP2-DT Gene

Paralogs for SP2-DT Gene

No data available for Paralogs for SP2-DT Gene

Variants for SP2-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SP2-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SP2-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SP2-DT
Leiden Open Variation Database (LOVD)
SP2-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SP2-DT Gene

Disorders for SP2-DT Gene

Additional Disease Information for SP2-DT

Open Targets Platform
Open Targets Platform

No disorders were found for SP2-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SP2-DT Gene

Publications for SP2-DT Gene

No publications were found for SP2-DT Gene.

No data available for Mastermind for SP2-DT Gene

Products for SP2-DT Gene

Sources for SP2-DT Gene