Aliases for SP2-AS1 Gene

Data sources for SP2-AS1 Gene:

RNA type for SP2-AS1 Gene

lncRNA

Aliases for SP2-AS1 Gene

External Ids for SP2-AS1 Gene

Summaries for SP2-AS1 Gene

GeneCards Summary for SP2-AS1 Gene

SP2-AS1 (SP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SP2-AS1 Gene

Genomics for SP2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SP2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SP2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SP2-AS1 Gene

Latest Assembly
chr17:47,891,234-47,941,411
(GRCh38/hg38)
Size:
50,178 bases
Orientation:
Minus strand

Previous Assembly
chr17:45,975,752-46,018,770
(GRCh37/hg19 by Entrez Gene)
Size:
43,019 bases
Orientation:
Minus strand

chr17:45,974,696-46,018,776
(GRCh37/hg19 by Ensembl)
Size:
44,081 bases
Orientation:
Minus strand

Genomic View for SP2-AS1 Gene

Genes around SP2-AS1 on UCSC Golden Path with GeneCards custom track
SP2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SP2-AS1 Gene

Proteins for SP2-AS1 Gene

Post-translational modifications for SP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SP2-AS1 Gene

Domains & Families for SP2-AS1 Gene

Gene Families for SP2-AS1 Gene

genes like me logo Genes that share domains with SP2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SP2-AS1 Gene

Function for SP2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SP2-AS1 Gene

Localization for SP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SP2-AS1 Gene

Pathways & Interactions for SP2-AS1 Gene

PathCards logo

SuperPathways for SP2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SP2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SP2-AS1 Gene

Drugs & Compounds for SP2-AS1 Gene

No Compound Related Data Available

Transcripts for SP2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SP2-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075EE8D_9606 lncRNA 2185 4

RefSeq: NR_103856,

LncBook: HSALNT0241799,

LNCipedia: SP2-AS1:3,

NONCODE: NONHSAT054343.2,

URS000075DDAD_9606 lncRNA 1099 4

RefSeq: NR_103857,

LncBook: HSALNT0241798,

LNCipedia: SP2-AS1:4,

NONCODE: NONHSAT054344.2,

URS0000451E9D_9606 lncRNA 915 4

Ensembl: ENST00000433001 (view in UCSC) ,

LncBook: HSALNT0241811,

LNCipedia: SP2-AS1:5,

NONCODE: NONHSAT054347.2,

URS00003AA9C6_9606 lncRNA 405 4

Ensembl: ENST00000585280 (view in UCSC) ,

LncBook: HSALNT0241794,

LNCipedia: SP2-AS1:6,

NONCODE: NONHSAT054342.2,

URS00003A2C2D_9606 lncRNA 1738 3

Ensembl: ENST00000411573 (view in UCSC) ,

LncBook: HSALNT0241804,

LNCipedia: SP2-AS1:7,

SP2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SP2-AS1 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SP2-AS1 Gene

No ASD Table

Relevant External Links for SP2-AS1 Gene

GeneLoc Exon Structure for
SP2-AS1

Expression for SP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SP2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SP2-AS1

genes like me logo Genes that share expression patterns with SP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SP2-AS1 Gene

Orthologs for SP2-AS1 Gene

Evolution for SP2-AS1 Gene

ENSEMBL:
Gene Tree for SP2-AS1 (if available)
TreeFam:
Gene Tree for SP2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for SP2-AS1

No data available for Orthologs for SP2-AS1 Gene

Paralogs for SP2-AS1 Gene

No data available for Paralogs for SP2-AS1 Gene

Variants for SP2-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SP2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3554498 CNV deletion 23714750
esv3640708 CNV loss 21293372
nsv2072 CNV deletion 18451855
nsv518892 CNV loss 19592680

Additional Variant Information for SP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SP2-AS1
Leiden Open Variation Database (LOVD)
SP2-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SP2-AS1 Gene

Disorders for SP2-AS1 Gene

Additional Disease Information for SP2-AS1

No disorders were found for SP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SP2-AS1 Gene

Publications for SP2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for SP2-AS1 Gene

Sources for SP2-AS1 Gene