Aliases for SP2-AS1 Gene

Data sources for SP2-AS1 Gene:

RNA type for SP2-AS1 Gene


Aliases for SP2-AS1 Gene

External Ids for SP2-AS1 Gene

Summaries for SP2-AS1 Gene

GeneCards Summary for SP2-AS1 Gene

SP2-AS1 (SP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SP2-AS1 Gene

Genomics for SP2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SP2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SP2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SP2-AS1 Gene

Latest Assembly
50,178 bases
Minus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
43,019 bases
Minus strand

(GRCh37/hg19 by Ensembl)
44,081 bases
Minus strand

Genomic View for SP2-AS1 Gene

Genes around SP2-AS1 on UCSC Golden Path with GeneCards custom track
SP2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SP2-AS1 Gene

Proteins for SP2-AS1 Gene

Post-translational modifications for SP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SP2-AS1 Gene

Domains & Families for SP2-AS1 Gene

Gene Families for SP2-AS1 Gene

genes like me logo Genes that share domains with SP2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SP2-AS1 Gene

Function for SP2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SP2-AS1 Gene

Localization for SP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SP2-AS1 Gene

Pathways & Interactions for SP2-AS1 Gene

PathCards logo

SuperPathways for SP2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SP2-AS1 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SP2-AS1 Gene

Drugs & Compounds for SP2-AS1 Gene

No Compound Related Data Available

Transcripts for SP2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SP2-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075EE8D_9606 lncRNA 2185 4

RefSeq: NR_103856,

LncBook: HSALNT0241799,

LNCipedia: SP2-AS1:3,


URS000075DDAD_9606 lncRNA 1099 4

RefSeq: NR_103857,

LncBook: HSALNT0241798,

LNCipedia: SP2-AS1:4,


URS0000451E9D_9606 lncRNA 915 4

Ensembl: ENST00000433001 (view in UCSC) ,

LncBook: HSALNT0241811,

LNCipedia: SP2-AS1:5,


URS00003AA9C6_9606 lncRNA 405 4

Ensembl: ENST00000585280 (view in UCSC) ,

LncBook: HSALNT0241794,

LNCipedia: SP2-AS1:6,


URS00003A2C2D_9606 lncRNA 1738 3

Ensembl: ENST00000411573 (view in UCSC) ,

LncBook: HSALNT0241804,

LNCipedia: SP2-AS1:7,

SP2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SP2-AS1 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SP2-AS1 Gene

No ASD Table

Relevant External Links for SP2-AS1 Gene

GeneLoc Exon Structure for

Expression for SP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SP2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SP2-AS1

genes like me logo Genes that share expression patterns with SP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SP2-AS1 Gene

Orthologs for SP2-AS1 Gene

Evolution for SP2-AS1 Gene

Gene Tree for SP2-AS1 (if available)
Gene Tree for SP2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for SP2-AS1

No data available for Orthologs for SP2-AS1 Gene

Paralogs for SP2-AS1 Gene

No data available for Paralogs for SP2-AS1 Gene

Variants for SP2-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SP2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3554498 CNV deletion 23714750
esv3640708 CNV loss 21293372
nsv2072 CNV deletion 18451855
nsv518892 CNV loss 19592680

Additional Variant Information for SP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
Leiden Open Variation Database (LOVD)

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SP2-AS1 Gene

Disorders for SP2-AS1 Gene

Additional Disease Information for SP2-AS1

No disorders were found for SP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SP2-AS1 Gene

Publications for SP2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for SP2-AS1 Gene

Sources for SP2-AS1 Gene