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Aliases for SP2-AS1 Gene

Subcategory (RNA class) for SP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SP2-AS1 Gene

  • SP2 Antisense RNA 1 2 3 5

External Ids for SP2-AS1 Gene

Summaries for SP2-AS1 Gene

GeneCards Summary for SP2-AS1 Gene

SP2-AS1 (SP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SP2-AS1 Gene

Genomics for SP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for SP2-AS1 Gene

Promoters and enhancers for SP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I047941 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 561 -0.4 -447 2 CLOCK MLX DMAP1 YBX1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 SP3 SP2-AS1 PNPO MRPL45P2 UBE2Z EFCAB13 SP2 ENSG00000264701 ENSG00000266601 CDK5RAP3 RPS2P47
GH17I047940 Enhancer 0.2 Ensembl 550.8 +0.9 909 0.2 PNPO SP2-AS1 LOC102724532 ENSG00000266601
GH17I047970 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.9 -29.9 -29912 2.1 CLOCK ZFP64 YBX1 DMAP1 YY1 E2F8 ZNF143 SP3 NFYC SSRP1 CDK5RAP3 SP2 ENSG00000266601 KPNB1 SCRN2 MRPL45P2 PNPO EFCAB13 PRR15L SP2-AS1
GH17I048001 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11 -62.0 -61991 4.4 HDGF ARNT ZNF133 SIN3A YBX1 ZBTB7B IRF4 YY1 ZNF121 ZNF766 PRR15L CALCOCO2 SP2 PNPO SP2-AS1 HOXB4 ENSG00000266601 NFE2L1 CBX1 SNX11
GH17I048728 Promoter/Enhancer 1.7 EPDnew ENCODE dbSUPER 10.2 -787.5 -787456 0.8 PKNOX1 SIN3A FEZF1 GLI4 ZNF2 GLIS2 ZNF213 ZNF302 KLF7 SP3 HOXB13 UBE2Z SP2 ENSG00000264701 CDK5RAP3 SCRN2 ENSG00000266601 CBX1 ENSG00000263412 SUMO2P17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SP2-AS1 Gene

Genomic Locations for SP2-AS1 Gene
chr17:47,897,330-47,941,410
(GRCh38/hg38)
Size:
44,081 bases
Orientation:
Minus strand
chr17:45,974,696-46,018,776
(GRCh37/hg19)

Genomic View for SP2-AS1 Gene

Genes around SP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SP2-AS1 Gene

Proteins for SP2-AS1 Gene

Post-translational modifications for SP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SP2-AS1 Gene

Domains & Families for SP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SP2-AS1 Gene

Function for SP2-AS1 Gene

Phenotypes From GWAS Catalog for SP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SP2-AS1 Gene

Localization for SP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SP2-AS1 Gene

Pathways & Interactions for SP2-AS1 Gene

SuperPathways for SP2-AS1 Gene

No Data Available

Interacting Proteins for SP2-AS1 Gene

Gene Ontology (GO) - Biological Process for SP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SP2-AS1 Gene

Drugs & Compounds for SP2-AS1 Gene

No Compound Related Data Available

Transcripts for SP2-AS1 Gene

mRNA/cDNA for SP2-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SP2-AS1 Gene

No ASD Table

Relevant External Links for SP2-AS1 Gene

GeneLoc Exon Structure for
SP2-AS1
ECgene alternative splicing isoforms for
SP2-AS1

Expression for SP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SP2-AS1 Gene

genes like me logo Genes that share expression patterns with SP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SP2-AS1 Gene

Orthologs for SP2-AS1 Gene

Evolution for SP2-AS1 Gene

ENSEMBL:
Gene Tree for SP2-AS1 (if available)
TreeFam:
Gene Tree for SP2-AS1 (if available)

No data available for Orthologs for SP2-AS1 Gene

Paralogs for SP2-AS1 Gene

No data available for Paralogs for SP2-AS1 Gene

Variants for SP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SP2-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1060504669 likely-benign, Pyridoxal 5'-phosphate-dependent epilepsy 47,943,335(-) T/G upstream_transcript_variant
rs11079804 conflicting-interpretations-of-pathogenicity, benign, not specified, Pyridoxal 5'-phosphate-dependent epilepsy 47,943,332(-) C/T upstream_transcript_variant
rs116464338 uncertain-significance, Pyridoxal 5'-phosphate-dependent epilepsy 47,941,561(-) G/A upstream_transcript_variant
rs145461623 uncertain-significance, not specified, Pyridoxal 5'-phosphate-dependent epilepsy 47,943,334(-) T/G upstream_transcript_variant
rs765314515 uncertain-significance, Pyridoxal 5'-phosphate-dependent epilepsy 47,941,766(-) G/C upstream_transcript_variant

Additional Variant Information for SP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SP2-AS1 Gene

Disorders for SP2-AS1 Gene

Additional Disease Information for SP2-AS1

No disorders were found for SP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SP2-AS1 Gene

Publications for SP2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SP2-AS1 Gene

Sources for SP2-AS1 Gene

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