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SOX5-AS1 (SOX5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH12J024222 | Promoter/Enhancer | 1 | EPDnew Ensembl ENCODE | 606.5 | +0.1 | 68 | 1 | CEBPB CEBPG SPI1 MAFK ATF4 JUND ATF3 | SOX5-AS1 lnc-LRMP-10 SOX5 lnc-SOX5-5 | |
GH12J024224 | Enhancer | 0.3 | Ensembl | 606.6 | +0.9 | 868 | 0.2 | SMARCA4 | SOX5-AS1 lnc-LRMP-10 SOX5 lnc-SOX5-5 | |
GH12J024226 | Enhancer | 1.3 | UCNEbase Ensembl ENCODE CraniofacialAtlas | 6.6 | +5.6 | 5568 | 4.8 | FOXA1 ZNF24 JUND CEBPB EZH2 FOS JUN POLR2A ZNF335 STAT1 | SOX5-AS1 lnc-LRMP-10 SOX5 lnc-SOX5-5 | |
GH12J024252 | Enhancer | 0.8 | UCNEbase Ensembl | 0.3 | +30.0 | 29968 | 2.4 | PRDM1 POLR2A ZNF384 GATA2 | MIR920 lnc-LRMP-10 SOX5-AS1 L13714-078 SOX5 lnc-SOX5-5 | |
GH12J024216 | Enhancer | 0.4 | Ensembl ENCODE | 0.4 | -6.8 | -6769 | 0.3 | ZBTB33 | MIR920 SOX5-AS1 SOX5 lnc-SOX5-5 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS000075D50E_9606 | lncRNA | 589 | 4 |
HGNC: 53311, RefSeq: NR_120472, LncBook: HSALNT0186650, LNCipedia: SOX5-AS1:10, |
URS00001FC4BD_9606 | lncRNA | 401 | 2 |
Ensembl: ENST00000540733 (view in UCSC) , LNCipedia: SOX5-AS1:9, |
URS0000EED049_9606 | lncRNA | 1752 | 1 |
Ensembl: ENST00000668226 (view in UCSC) , |
URS0000EED88C_9606 | lncRNA | 1579 | 1 |
Ensembl: ENST00000662250 (view in UCSC) , |
URS0000EF1C39_9606 | lncRNA | 1422 | 1 |
Ensembl: ENST00000666329 (view in UCSC) , |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv261e214 | CNV | loss | 21293372 |
esv3628861 | CNV | gain | 21293372 |
No disorders were found for SOX5-AS1 Gene.