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Aliases for SOX5-AS1 Gene
Subcategory (RNA class) for SOX5-AS1 Gene
lncRNA
Aliases for SOX5-AS1 Gene
External Ids for SOX5-AS1 Gene
- HGNC: 53311
- NCBI Entrez Gene: 101928471
- Ensembl: ENSG00000256120
Summaries for SOX5-AS1 Gene
GeneCards Summary for SOX5-AS1 Gene
SOX5-AS1 (SOX5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for SOX5-AS1 Gene
- HGNC (53311)
- NCBI Entrez Gene (101928471)
- Ensembl (ENSG00000256120)
- Open Targets Platform(ENSG00000256120)
- Monarch Initiative
- Search for SOX5-AS1 at DataMed
- Search for SOX5-AS1 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SOX5-AS1 Gene
Genomics for SOX5-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SOX5-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J024222 | Promoter/Enhancer | 1 | EPDnew Ensembl ENCODE | 256.5 | +0.1 | 68 | 1 | CEBPB SPI1 MAFK JUND CEBPG ATF4 ATF3 | SOX5-AS1 HSALNG0089863 SOX5 lnc-SOX5-5 | |
| GH12J024224 | Enhancer | 0.2 | Ensembl | 256.6 | +0.9 | 868 | 0.2 | SOX5-AS1 HSALNG0089863 SOX5 lnc-SOX5-5 | ||
| GH12J024226 | Enhancer | 1.2 | UCNEbase Ensembl ENCODE CraniofacialAtlas | 6.6 | +5.6 | 5568 | 4.8 | CEBPB ZFP91 STAT3 ZNF24 GATA2 ZNF217 FOS EZH2 ZNF335 JUND | SOX5-AS1 HSALNG0089863 SOX5 lnc-SOX5-5 | |
| GH12J024252 | Enhancer | 0.8 | UCNEbase Ensembl | 0.3 | +30.1 | 30068 | 2.2 | GATA2 ZNF384 POLR2A PRDM1 | MIR920 lnc-LRMP-10 SOX5-AS1 L13714-078 SOX5 lnc-SOX5-5 | |
| GH12J024216 | Enhancer | 0.4 | Ensembl ENCODE | 0.4 | -6.8 | -6769 | 0.3 | ZBTB33 | MIR920 SOX5-AS1 HSALNG0089861 SOX5 lnc-SOX5-5 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SOX5-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SOX5-AS1 Gene
Latest Assembly
- chr12:24,223,233-24,276,616
- (GRCh38/hg38)
- Size:
- 53,384 bases
- Orientation:
- Plus strand
Previous Assembly
- chr12:24,376,205-24,390,899
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 14,695 bases
- Orientation:
- Plus strand
- chr12:24,376,205-24,390,899
- (GRCh37/hg19 by Ensembl)
- Size:
- 14,695 bases
- Orientation:
- Plus strand
Genomic View for SOX5-AS1 Gene
Genes around SOX5-AS1 on UCSC Golden Path with GeneCards custom track
SOX5-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12p12.1 by HGNC
- 12p12.1 by Entrez Gene
- 12p12.1 by Ensembl
SOX5-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SOX5-AS1 Gene
Proteins for SOX5-AS1 Gene
Post-translational modifications for SOX5-AS1 Gene
No Post-translational modifications
No data available for DME Specific Peptides for SOX5-AS1 Gene
Domains & Families for SOX5-AS1 Gene
Gene Families for SOX5-AS1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SOX5-AS1 Gene
Function for SOX5-AS1 Gene
Phenotypes From GWAS Catalog for SOX5-AS1 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOX5-AS1 Gene
Localization for SOX5-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOX5-AS1 Gene
Transcripts for SOX5-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SOX5-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075D50E_9606 | lncRNA | 594 | 3 |
RefSeq: NR_120472, LncBook: HSALNT0186650, LNCipedia: SOX5-AS1:10, |
| URS00001FC4BD_9606 | lncRNA | 403 | 2 |
Ensembl: ENST00000540733 (view in UCSC) , LNCipedia: SOX5-AS1:9, |
| URS0000EED049_9606 | lncRNA | 1752 | 1 |
Ensembl: ENST00000668226 (view in UCSC) , |
| URS0000EED88C_9606 | lncRNA | 1579 | 1 |
Ensembl: ENST00000662250 (view in UCSC) , |
| URS0000EF1C39_9606 | lncRNA | 1422 | 1 |
Ensembl: ENST00000666329 (view in UCSC) , |
SOX5-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SOX5-AS1 Gene
- 3 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for SOX5-AS1 Gene
- GeneLoc Exon Structure for
- SOX5-AS1
Expression for SOX5-AS1 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOX5-AS1 Gene
Orthologs for SOX5-AS1 Gene
No data available for Orthologs for SOX5-AS1 Gene
Paralogs for SOX5-AS1 Gene
No data available for Paralogs for SOX5-AS1 Gene
Variants for SOX5-AS1 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv261e214 | CNV | loss | 21293372 |
| esv3628861 | CNV | gain | 21293372 |
Additional Variant Information for SOX5-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SOX5-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SOX5-AS1 Gene
Disorders for SOX5-AS1 Gene
Additional Disease Information for SOX5-AS1
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for SOX5-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SOX5-AS1 Gene
Publications for SOX5-AS1 Gene
- Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. (PMID: 20195266) Adkins DE … van den Oord EJ (Molecular psychiatry 2011) 3
- Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03). (PMID: 19754311) Le Clerc S … Zagury JF (The Journal of infectious diseases 2009) 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
No data available for Mastermind for SOX5-AS1 Gene
Products for SOX5-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SOX5-AS1
- Origene Custom Protein Services for SOX5-AS1
- Browse OriGene Inhibitory RNA Products For SOX5-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SOX5-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SOX5-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SOX5-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SOX5-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SOX5-AS1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SOX5-AS1
Sources for SOX5-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB