Aliases for SOX5-AS1 Gene

Subcategory (RNA class) for SOX5-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SOX5-AS1 Gene

  • SOX5 Antisense RNA 1 2 3 5
  • SOX5-AS1 2 5 165
  • NONHSAG010687.2 91
  • HSALNG0089862 164

External Ids for SOX5-AS1 Gene

Summaries for SOX5-AS1 Gene

GeneCards Summary for SOX5-AS1 Gene

SOX5-AS1 (SOX5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SOX5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SOX5-AS1 Gene

Genomics for SOX5-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SOX5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J024222 Promoter/Enhancer 1 EPDnew Ensembl ENCODE 606.5 +0.1 68 1 CEBPB CEBPG SPI1 MAFK ATF4 JUND ATF3 SOX5-AS1 lnc-LRMP-10 SOX5 lnc-SOX5-5
GH12J024224 Enhancer 0.3 Ensembl 606.6 +0.9 868 0.2 SMARCA4 SOX5-AS1 lnc-LRMP-10 SOX5 lnc-SOX5-5
GH12J024226 Enhancer 1.3 UCNEbase Ensembl ENCODE CraniofacialAtlas 6.6 +5.6 5568 4.8 FOXA1 ZNF24 JUND CEBPB EZH2 FOS JUN POLR2A ZNF335 STAT1 SOX5-AS1 lnc-LRMP-10 SOX5 lnc-SOX5-5
GH12J024252 Enhancer 0.8 UCNEbase Ensembl 0.3 +30.0 29968 2.4 PRDM1 POLR2A ZNF384 GATA2 MIR920 lnc-LRMP-10 SOX5-AS1 L13714-078 SOX5 lnc-SOX5-5
GH12J024216 Enhancer 0.4 Ensembl ENCODE 0.4 -6.8 -6769 0.3 ZBTB33 MIR920 SOX5-AS1 SOX5 lnc-SOX5-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SOX5-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SOX5-AS1 Gene

Genomic Locations for SOX5-AS1 Gene
chr12:24,223,233-24,276,616
(GRCh38/hg38)
Size:
53,384 bases
Orientation:
Plus strand
chr12:24,376,205-24,390,899
(GRCh37/hg19)
Size:
14,695 bases
Orientation:
Plus strand

Genomic View for SOX5-AS1 Gene

Genes around SOX5-AS1 on UCSC Golden Path with GeneCards custom track
SOX5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SOX5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOX5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOX5-AS1 Gene

Proteins for SOX5-AS1 Gene

Post-translational modifications for SOX5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOX5-AS1 Gene

Domains & Families for SOX5-AS1 Gene

Gene Families for SOX5-AS1 Gene

genes like me logo Genes that share domains with SOX5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SOX5-AS1 Gene

Function for SOX5-AS1 Gene

Phenotypes From GWAS Catalog for SOX5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOX5-AS1 Gene

Localization for SOX5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOX5-AS1 Gene

Pathways & Interactions for SOX5-AS1 Gene

PathCards logo

SuperPathways for SOX5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SOX5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SOX5-AS1 Gene

Drugs & Compounds for SOX5-AS1 Gene

No Compound Related Data Available

Transcripts for SOX5-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SOX5-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D50E_9606 lncRNA 589 4

HGNC: 53311,

RefSeq: NR_120472,

LncBook: HSALNT0186650,

LNCipedia: SOX5-AS1:10,

URS00001FC4BD_9606 lncRNA 401 2

Ensembl: ENST00000540733 (view in UCSC) ,

LNCipedia: SOX5-AS1:9,

URS0000EED049_9606 lncRNA 1752 1

Ensembl: ENST00000668226 (view in UCSC) ,

URS0000EED88C_9606 lncRNA 1579 1

Ensembl: ENST00000662250 (view in UCSC) ,

URS0000EF1C39_9606 lncRNA 1422 1

Ensembl: ENST00000666329 (view in UCSC) ,

SOX5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SOX5-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SOX5-AS1 Gene

No ASD Table

Relevant External Links for SOX5-AS1 Gene

GeneLoc Exon Structure for
SOX5-AS1

Expression for SOX5-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOX5-AS1 Gene

Orthologs for SOX5-AS1 Gene

Evolution for SOX5-AS1 Gene

ENSEMBL:
Gene Tree for SOX5-AS1 (if available)
TreeFam:
Gene Tree for SOX5-AS1 (if available)

No data available for Orthologs for SOX5-AS1 Gene

Paralogs for SOX5-AS1 Gene

No data available for Paralogs for SOX5-AS1 Gene

Variants for SOX5-AS1 Gene

Additional dbSNP identifiers (rs#s) for SOX5-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SOX5-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv261e214 CNV loss 21293372
esv3628861 CNV gain 21293372

Additional Variant Information for SOX5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOX5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SOX5-AS1 Gene

Disorders for SOX5-AS1 Gene

No disorders were found for SOX5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SOX5-AS1 Gene

Publications for SOX5-AS1 Gene

  1. Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. (PMID: 20195266) Adkins DE … van den Oord EJ (Molecular psychiatry 2011) 3
  2. Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03). (PMID: 19754311) Le Clerc S … Zagury JF (The Journal of infectious diseases 2009) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for SOX5-AS1 Gene

Products for SOX5-AS1 Gene

Sources for SOX5-AS1 Gene