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Aliases for SOX21-AS1 Gene
Subcategory (RNA class) for SOX21-AS1 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for SOX21-AS1 Gene
External Ids for SOX21-AS1 Gene
- HGNC: 39807
- Entrez Gene: 100507533
- Ensembl: ENSG00000227640
Previous GeneCards Identifiers for SOX21-AS1 Gene
- GC13P095366
Summaries for SOX21-AS1 Gene
GeneCards Summary for SOX21-AS1 Gene
SOX21-AS1 (SOX21 Antisense Divergent Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SOX21-AS1 include Oral Squamous Cell Carcinoma and Colorectal Cancer.
Additional gene information for SOX21-AS1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SOX21-AS1 Gene
Genomics for SOX21-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SOX21-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH13J094705 | Promoter/Enhancer | 2.3 | VISTA UCNEbase EPDnew Ensembl ENCODE dbSUPER | 600.4 | +6.7 | 6720 | 8.9 | RNF2 ATF7 PRDM10 ZSCAN4 ZNF24 PATZ1 CTCF ZNF501 EZH2 ZNF341 | LOC101927248 LINC00391 SOX21-AS1 TGDS GPR180 LOC112268114 SOX21 | |
| GH13J094704 | Enhancer | 0.5 | ENCODE dbSUPER | 600.7 | +1.9 | 1871 | 0.8 | USF1 EZH2 | SOX21-AS1 LOC101927248 LINC00391 SOX21 GPR180 | |
| GH13J094707 | Enhancer | 0.4 | ENCODE dbSUPER | 600.7 | +1.3 | 1328 | 0.2 | EZH2 | SOX21-AS1 LOC101927248 LINC00391 SOX21 GPR180 | |
| GH13J094708 | Enhancer | 0.3 | ENCODE | 600.7 | +0.9 | 868 | 0.2 | EZH2 | SOX21-AS1 LINC00391 SOX21 GPR180 | |
| GH13J094706 | Enhancer | 0.3 | ENCODE | 600.7 | +1.1 | 1128 | 0.2 | EZH2 | SOX21-AS1 LINC00391 SOX21 GPR180 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SOX21-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SOX21-AS1 Gene
Genomic Locations for SOX21-AS1 Gene
- chr13:94,703,454-94,803,430
- (GRCh38/hg38)
- Size:
- 99,977 bases
- Orientation:
- Plus strand
- chr13:95,364,970-95,368,500
- (GRCh37/hg19)
- Size:
- 3,531 bases
- Orientation:
- Plus strand
Genomic View for SOX21-AS1 Gene
Genes around SOX21-AS1 on UCSC Golden Path with GeneCards custom track
SOX21-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 13q32.1 by HGNC
- 13q32.1 by Entrez Gene
- 13q32.1 by Ensembl
SOX21-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SOX21-AS1 Gene
Proteins for SOX21-AS1 Gene
Post-translational modifications for SOX21-AS1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SOX21-AS1
- Origene Custom Protein Services for SOX21-AS1
No data available for DME Specific Peptides for SOX21-AS1 Gene
Domains & Families for SOX21-AS1 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SOX21-AS1 Gene
Function for SOX21-AS1 Gene
Phenotypes From GWAS Catalog for SOX21-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SOX21-AS1 - Select products 50% OFF >
- * SOX21-AS1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SOX21-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SOX21-AS1 - Select products 50% OFF >
- * SOX21-AS1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOX21-AS1 Gene
Localization for SOX21-AS1 Gene
| Compartment | Confidence |
|---|---|
| cytoskeleton | 1 |
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOX21-AS1 Gene
Transcripts for SOX21-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SOX21-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075C72F_9606 | lncRNA | 2986 | 3 |
HGNC: 39807, RefSeq: NR_046514, LNCipedia: SOX21-AS1:3, |
| URS0000585972_9606 | lncRNA | 3287 | 2 |
Ensembl: ENST00000438290 (view in UCSC) , LNCipedia: SOX21-AS1:4, |
| URS0000EF4746_9606 | lncRNA | 1565 | 1 |
Ensembl: ENST00000665450 (view in UCSC) , |
| URS00008BDE2D_9606 | lncRNA | 2894 | 3 |
LncBook: HSALNT0205489, LNCipedia: lnc-GPR180-2:2, NONCODE: NONHSAT034743.2, |
| URS00008B5AC0_9606 | lncRNA | 2984 | 2 |
LNCipedia: SOX21-AS1:1, NONCODE: NONHSAT034741.2, |
SOX21-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SOX21-AS1 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SOX21-AS1 - Select products 50% OFF >
- * SOX21-AS1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SOX21-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SOX21-AS1 - Select products 50% OFF >
- * SOX21-AS1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for SOX21-AS1 Gene
- GeneLoc Exon Structure for
- SOX21-AS1
Expression for SOX21-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for SOX21-AS1 Gene
This gene is overexpressed in Esophagus - Mucosa (x4.9), Brain - Amygdala (x4.5), Brain - Caudate (basal ganglia) (x4.3), and Brain - Putamen (basal ganglia) (x4.0).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SOX21-AS1
SOURCE GeneReport for Unigene cluster for SOX21-AS1 Gene:
Hs.556071
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOX21-AS1 Gene
Orthologs for SOX21-AS1 Gene
No data available for Orthologs for SOX21-AS1 Gene
Paralogs for SOX21-AS1 Gene
No data available for Paralogs for SOX21-AS1 Gene
Variants for SOX21-AS1 Gene
Additional Variant Information for SOX21-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SOX21-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SOX21-AS1 Gene
Disorders for SOX21-AS1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| oral squamous cell carcinoma |
|
|
| colorectal cancer |
|
Search SOX21-AS1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SOX21-AS1
No data available for UniProtKB/Swiss-Prot and Genatlas for SOX21-AS1 Gene
Publications for SOX21-AS1 Gene
- A Novel Long Non-Coding RNA, SOX21-AS1, Indicates a Poor Prognosis and Promotes Lung Adenocarcinoma Proliferation. (PMID: 28873379) Lu X … Guo R (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2017) 2 3
- Aberrant DNA hypermethylation-silenced SOX21-AS1 gene expression and its clinical importance in oral cancer. (PMID: 27933111) Yang CM … Tsai KW (Clinical epigenetics 2016) 2 3
- Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. (PMID: 25959816) Hezroni H … Ulitsky I (Cell reports 2015) 2 3
- Long noncoding RNA SOX21-AS1 promotes cervical cancer progression by competitively sponging miR-7/VDAC1. (PMID: 30912129) Zhang X … Zhang Z (Journal of cellular physiology 2019) 3
- Hypomethylation of the lncRNA SOX21-AS1 has clinical prognostic value in cervical cancer. (PMID: 31369759) Wang R … Cheng G (Life sciences 2019) 3
Products for SOX21-AS1 Gene
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- Custom Assay Services
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- Browse CRISPR knockouts for SOX21-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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Sources for SOX21-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB