Aliases for SOS1-IT1 Gene

Subcategory (RNA class) for SOS1-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SOS1-IT1 Gene

  • SOS1 Intronic Transcript 1 2 3 5
  • SOS1-IT1 2 5 165
  • SOS1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG027535.2 91
  • HSALNG0014352 164

External Ids for SOS1-IT1 Gene

Previous GeneCards Identifiers for SOS1-IT1 Gene

  • GC02M039221

Summaries for SOS1-IT1 Gene

GeneCards Summary for SOS1-IT1 Gene

SOS1-IT1 (SOS1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SOS1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SOS1-IT1 Gene

Genomics for SOS1-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SOS1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J038978 Enhancer 0.4 Ensembl dbSUPER 0.4 +15.0 14957 2.2 SPI1 SOS1 SOS1-IT1 HSALNG0014347 ARHGEF33
GH02J038973 Enhancer 0.3 Ensembl 0.4 +18.4 18357 3 CHD4 KDM1A HSALNG0014347 SOS1-IT1 ARHGEF33 SOS1
GH02J038966 Enhancer 0.4 Ensembl 0.3 +26.9 26857 1.2 ZNF341 NFIC NFIA HSALNG0014347 SOS1-IT1 ARHGEF33 SOS1
GH02J038989 Enhancer 0.2 Ensembl 0.7 +4.4 4357 0.6 SOS1-IT1 lnc-DHX57-4 HSALNG0014347 ARHGEF33 SOS1
GH02J038991 Enhancer 0.2 Ensembl 0.7 +2.4 2357 1.8 DHX57 MORN2 ENSG00000273035 SOS1 SOS1-IT1 lnc-DHX57-4 HSALNG0014347 ARHGEF33
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SOS1-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SOS1-IT1 Gene

Genomic Locations for SOS1-IT1 Gene
chr2:38,992,279-38,993,858
(GRCh38/hg38)
Size:
1,580 bases
Orientation:
Minus strand
chr2:39,219,420-39,220,998
(GRCh37/hg19)
Size:
1,579 bases
Orientation:
Minus strand

Genomic View for SOS1-IT1 Gene

Genes around SOS1-IT1 on UCSC Golden Path with GeneCards custom track
SOS1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SOS1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOS1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SOS1-IT1 Gene

Proteins for SOS1-IT1 Gene

Post-translational modifications for SOS1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOS1-IT1 Gene

Domains & Families for SOS1-IT1 Gene

Gene Families for SOS1-IT1 Gene

genes like me logo Genes that share domains with SOS1-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SOS1-IT1 Gene

Function for SOS1-IT1 Gene

Phenotypes From GWAS Catalog for SOS1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOS1-IT1 Gene

Localization for SOS1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOS1-IT1 Gene

Pathways & Interactions for SOS1-IT1 Gene

PathCards logo

SuperPathways for SOS1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SOS1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SOS1-IT1 Gene

Drugs & Compounds for SOS1-IT1 Gene

No Compound Related Data Available

Transcripts for SOS1-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SOS1-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000315D76_9606 lncRNA 1191 5

HGNC: 41385,

Ensembl: ENST00000594472 (view in UCSC) ,

LncBook: HSALNT0030395,

LNCipedia: SOS1-IT1:2,

NONCODE: NONHSAT070215.2,

URS000015B6EC_9606 lncRNA 664 4

Ensembl: ENST00000609942 (view in UCSC) ,

LncBook: HSALNT0030396,

LNCipedia: SOS1-IT1:3,

NONCODE: NONHSAT184513.1,

URS0000022786_9606 lncRNA 539 4

Ensembl: ENST00000420644 (view in UCSC) ,

LncBook: HSALNT0030397,

LNCipedia: SOS1-IT1:1,

NONCODE: NONHSAT070216.2,

URS00009C2526_9606 lncRNA 539 2

LncBook: HSALNT0030398,

NONCODE: NONHSAT184514.1,

SOS1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SOS1-IT1 Gene

3 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SOS1-IT1 Gene

No ASD Table

Relevant External Links for SOS1-IT1 Gene

GeneLoc Exon Structure for
SOS1-IT1

Expression for SOS1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SOS1-IT1 Gene

genes like me logo Genes that share expression patterns with SOS1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOS1-IT1 Gene

Orthologs for SOS1-IT1 Gene

Evolution for SOS1-IT1 Gene

ENSEMBL:
Gene Tree for SOS1-IT1 (if available)
TreeFam:
Gene Tree for SOS1-IT1 (if available)

No data available for Orthologs for SOS1-IT1 Gene

Paralogs for SOS1-IT1 Gene

No data available for Paralogs for SOS1-IT1 Gene

Variants for SOS1-IT1 Gene

Additional Variant Information for SOS1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOS1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SOS1-IT1 Gene

Disorders for SOS1-IT1 Gene

No disorders were found for SOS1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SOS1-IT1 Gene

Publications for SOS1-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

Products for SOS1-IT1 Gene

Sources for SOS1-IT1 Gene