Aliases for SORCS3-AS1 Gene

Subcategory (RNA class) for SORCS3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SORCS3-AS1 Gene

  • SORCS3 Antisense RNA 1 2 3 5
  • SORCS3-AS1 2 168
  • NONHSAG006803 92
  • HSALNG0080438 167

External Ids for SORCS3-AS1 Gene

Previous GeneCards Identifiers for SORCS3-AS1 Gene

  • GC10M106426

Summaries for SORCS3-AS1 Gene

GeneCards Summary for SORCS3-AS1 Gene

SORCS3-AS1 (SORCS3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SORCS3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SORCS3-AS1 Gene

Genomics for SORCS3-AS1 Gene

GeneHancer (GH) Regulatory Elements for SORCS3-AS1 Gene

Promoters and enhancers for SORCS3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J104645 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 12.3 +24.8 24817 4.4 CTCF TEAD4 ZBTB26 ZEB1 HDAC2 ZNF341 EZH2 SMC3 ZBTB17 ZNF263 SORCS3 SORCS3-AS1 CFAP43 lnc-ITPRIP-6
GH10J104680 Promoter/Enhancer 0.8 ENCODE CraniofacialAtlas 0.4 -14.7 -14733 0.6 NRF1 POLR2A MAFK PHF8 ZNF335 TBP KDM1A SORCS3-AS1 SORCS3 piR-51059-002
GH10J104706 Enhancer 0.3 Ensembl 0.3 -41.9 -41884 2.2 EP300 NANOG SORCS3 piR-51059-002 SORCS3-AS1
GH10J104711 Enhancer 0.3 Ensembl 0.3 -46.1 -46084 1.8 ZNF263 GATA2 GSTO1 piR-51059-002 SORCS3-AS1 SORCS3
GH10J104660 Enhancer 0.2 Ensembl 0.4 +6.2 6216 0.8 lnc-ITPRIP-6 SORCS3-AS1 SORCS3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SORCS3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SORCS3-AS1 Gene

Genomic Locations for SORCS3-AS1 Gene
chr10:104,664,608-104,666,217
(GRCh38/hg38)
Size:
1,610 bases
Orientation:
Minus strand
chr10:106,424,366-106,425,973
(GRCh37/hg19)
Size:
1,608 bases
Orientation:
Minus strand

Genomic View for SORCS3-AS1 Gene

Genes around SORCS3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SORCS3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SORCS3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SORCS3-AS1 Gene

Proteins for SORCS3-AS1 Gene

Post-translational modifications for SORCS3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SORCS3-AS1 Gene

Domains & Families for SORCS3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SORCS3-AS1 Gene

Function for SORCS3-AS1 Gene

Phenotypes From GWAS Catalog for SORCS3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SORCS3-AS1 Gene

Localization for SORCS3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SORCS3-AS1 Gene

Pathways & Interactions for SORCS3-AS1 Gene

PathCards logo

SuperPathways for SORCS3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SORCS3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SORCS3-AS1 Gene

Drugs & Compounds for SORCS3-AS1 Gene

No Compound Related Data Available

Transcripts for SORCS3-AS1 Gene

mRNA/cDNA for SORCS3-AS1 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SORCS3-AS1 Gene

No ASD Table

Relevant External Links for SORCS3-AS1 Gene

GeneLoc Exon Structure for
SORCS3-AS1

Expression for SORCS3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SORCS3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SORCS3-AS1 Gene

This gene is overexpressed in Testis (x52.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SORCS3-AS1

SOURCE GeneReport for Unigene cluster for SORCS3-AS1 Gene:

Hs.348526
genes like me logo Genes that share expression patterns with SORCS3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SORCS3-AS1 Gene

Orthologs for SORCS3-AS1 Gene

Evolution for SORCS3-AS1 Gene

ENSEMBL:
Gene Tree for SORCS3-AS1 (if available)
TreeFam:
Gene Tree for SORCS3-AS1 (if available)

No data available for Orthologs for SORCS3-AS1 Gene

Paralogs for SORCS3-AS1 Gene

No data available for Paralogs for SORCS3-AS1 Gene

Variants for SORCS3-AS1 Gene

Additional dbSNP identifiers (rs#s) for SORCS3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SORCS3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3579100 CNV loss 25503493
nsv831972 CNV gain 17160897

Additional Variant Information for SORCS3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SORCS3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SORCS3-AS1 Gene

Disorders for SORCS3-AS1 Gene

Additional Disease Information for SORCS3-AS1

No disorders were found for SORCS3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SORCS3-AS1 Gene

Publications for SORCS3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for SORCS3-AS1 Gene

Sources for SORCS3-AS1 Gene