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Aliases for SORCS3-AS1 Gene

Subcategory (RNA class) for SORCS3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SORCS3-AS1 Gene

  • SORCS3 Antisense RNA 1 2 3 5

External Ids for SORCS3-AS1 Gene

Previous GeneCards Identifiers for SORCS3-AS1 Gene

  • GC10M106426

Summaries for SORCS3-AS1 Gene

GeneCards Summary for SORCS3-AS1 Gene

SORCS3-AS1 (SORCS3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SORCS3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SORCS3-AS1 Gene

Genomics for SORCS3-AS1 Gene

GeneHancer (GH) Regulatory Elements for SORCS3-AS1 Gene

Promoters and enhancers for SORCS3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I104643 Enhancer 0.6 ENCODE 12.3 +23.4 23358 0.2 CTCF L3MBTL2 MAX RAD21 ZBTB48 ZNF143 CTBP2 ZBTB26 ZBTB17 EZH2 SORCS3-AS1 SORCS3
GH10I104642 Enhancer 0.5 FANTOM5 12.3 +23.8 23836 0.1 CTCF ZBTB48 EZH2 SORCS3 SORCS3-AS1 CFAP43
GH10I104644 Enhancer 0.5 ENCODE 12.3 +23.6 23628 0.1 CTCF ZBTB48 ZNF143 CTBP2 EZH2 SORCS3 SORCS3-AS1
GH10I104680 Enhancer 0.7 Ensembl ENCODE 0.4 -14.9 -14913 0.9 ZNF335 ZFHX2 POLR2A NRF1 ZNF623 MAFK SORCS3-AS1 SORCS3 GC10P105124
GH10I104735 Enhancer 0.7 Ensembl ENCODE 0.2 -69.6 -69583 1.4 USF1 USF2 RCOR1 MNT SORCS3 SORCS3-AS1 GC10P105124
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SORCS3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SORCS3-AS1 Gene

Genomic Locations for SORCS3-AS1 Gene
chr10:104,664,608-104,666,216
(GRCh38/hg38)
Size:
1,609 bases
Orientation:
Minus strand
chr10:106,424,366-106,425,973
(GRCh37/hg19)

Genomic View for SORCS3-AS1 Gene

Genes around SORCS3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SORCS3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SORCS3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SORCS3-AS1 Gene

Proteins for SORCS3-AS1 Gene

Post-translational modifications for SORCS3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SORCS3-AS1 Gene

Domains & Families for SORCS3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SORCS3-AS1 Gene

Function for SORCS3-AS1 Gene

Phenotypes From GWAS Catalog for SORCS3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SORCS3-AS1 Gene

Localization for SORCS3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SORCS3-AS1 Gene

Pathways & Interactions for SORCS3-AS1 Gene

SuperPathways for SORCS3-AS1 Gene

No Data Available

Interacting Proteins for SORCS3-AS1 Gene

Gene Ontology (GO) - Biological Process for SORCS3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SORCS3-AS1 Gene

Drugs & Compounds for SORCS3-AS1 Gene

No Compound Related Data Available

Transcripts for SORCS3-AS1 Gene

mRNA/cDNA for SORCS3-AS1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SORCS3-AS1 Gene

SORCS3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SORCS3-AS1 Gene

No ASD Table

Relevant External Links for SORCS3-AS1 Gene

GeneLoc Exon Structure for
SORCS3-AS1
ECgene alternative splicing isoforms for
SORCS3-AS1

Expression for SORCS3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SORCS3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SORCS3-AS1 Gene

This gene is overexpressed in Testis (x52.7).

SOURCE GeneReport for Unigene cluster for SORCS3-AS1 Gene:

Hs.348526
genes like me logo Genes that share expression patterns with SORCS3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SORCS3-AS1 Gene

Orthologs for SORCS3-AS1 Gene

Evolution for SORCS3-AS1 Gene

ENSEMBL:
Gene Tree for SORCS3-AS1 (if available)
TreeFam:
Gene Tree for SORCS3-AS1 (if available)

No data available for Orthologs for SORCS3-AS1 Gene

Paralogs for SORCS3-AS1 Gene

No data available for Paralogs for SORCS3-AS1 Gene

Variants for SORCS3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SORCS3-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000123501 -- 104,665,076(-) A/C non_coding_transcript_variant
rs1000127382 -- 104,664,276(-) G/A downstream_transcript_variant
rs1000421657 -- 104,665,353(-) G/A intron_variant
rs1000683777 -- 104,667,685(-) A/G upstream_transcript_variant
rs1001692950 -- 104,666,785(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SORCS3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv831972 CNV gain 17160897
esv3579100 CNV loss 25503493

Additional Variant Information for SORCS3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SORCS3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SORCS3-AS1 Gene

Disorders for SORCS3-AS1 Gene

Additional Disease Information for SORCS3-AS1

No disorders were found for SORCS3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SORCS3-AS1 Gene

Publications for SORCS3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SORCS3-AS1 Gene

Sources for SORCS3-AS1 Gene

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