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Aliases for SOGA3 Gene

Aliases for SOGA3 Gene

  • SOGA Family Member 3 2 3 5
  • C6orf174 3 4
  • Chromosome 6 Open Reading Frame 174 2
  • Protein SOGA3 3
  • DJ403A15.3 3

External Ids for SOGA3 Gene

Previous HGNC Symbols for SOGA3 Gene

  • C6orf174

Previous GeneCards Identifiers for SOGA3 Gene

  • GC06M127760

Summaries for SOGA3 Gene

GeneCards Summary for SOGA3 Gene

SOGA3 (SOGA Family Member 3) is a Protein Coding gene. Diseases associated with SOGA3 include Heart Conduction Disease. An important paralog of this gene is ENSG00000255330.

Additional gene information for SOGA3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOGA3 Gene

Genomics for SOGA3 Gene

GeneHancer (GH) Regulatory Elements for SOGA3 Gene

Promoters and enhancers for SOGA3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I127518 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 556.3 +0.3 287 1.5 KLF17 ZNF76 SIN3A ZNF2 ZNF335 ZSCAN5C RCOR1 EGR2 SP3 USF2 SOGA3 ENSG00000255330 C6orf58 KIAA0408
GH06I127481 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.7 +36.0 36041 4 FOXA2 SIN3A BATF ETS1 ZEB1 ZNF366 ATF7 FOS JUNB CEBPB C6orf58 KIAA0408 SOGA3 ENSG00000255330 ECHDC1 PIR32248
GH06I127514 Enhancer 1.1 Ensembl ENCODE 0.8 +3.6 3554 2.8 PKNOX1 SIN3A ZNF2 ZNF48 SLC30A9 GLIS2 ZNF143 KLF7 ZNF202 SP3 KIAA0408 ENSG00000255330 SOGA3 PIR32248
GH06I127456 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 0.2 +61.2 61225 4.1 ATF1 FOXA2 MAX MZF1 SIN3A CEBPG YY1 ZNF316 HNF4G PRDM10 KIAA0408 ECHDC1 GC06P127437 SOGA3 ENSG00000255330
GH06I127463 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 +55.0 54996 2.6 CTCF CLOCK ZNF654 RFX1 L3MBTL2 TEAD1 SIN3A REST IRF4 RAD21 ECHDC1 KIAA0408 GC06P127475 ENSG00000255330 SOGA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SOGA3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SOGA3 Gene

Genomic Locations for SOGA3 Gene
chr6:127,438,406-127,519,355
(GRCh38/hg38)
Size:
80,950 bases
Orientation:
Minus strand
chr6:127,759,551-127,840,500
(GRCh37/hg19)

Genomic View for SOGA3 Gene

Genes around SOGA3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOGA3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOGA3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOGA3 Gene

Proteins for SOGA3 Gene

  • Protein details for SOGA3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TF21-SOGA3_HUMAN
    Recommended name:
    Protein SOGA3
    Protein Accession:
    Q5TF21

    Protein attributes for SOGA3 Gene

    Size:
    947 amino acids
    Molecular mass:
    103199 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SOGA3 Gene

Post-translational modifications for SOGA3 Gene

No Post-translational modifications

Other Protein References for SOGA3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SOGA3 Gene

Domains & Families for SOGA3 Gene

Gene Families for SOGA3 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for SOGA3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SOGA3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5TF21

UniProtKB/Swiss-Prot:

SOGA3_HUMAN :
  • Belongs to the SOGA family.
Family:
  • Belongs to the SOGA family.
genes like me logo Genes that share domains with SOGA3: view

Function for SOGA3 Gene

Phenotypes From GWAS Catalog for SOGA3 Gene

Phenotypes for SOGA3 Gene

genes like me logo Genes that share phenotypes with SOGA3: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SOGA3 Gene

Localization for SOGA3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SOGA3 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SOGA3 gene
Compartment Confidence
plasma membrane 3
extracellular 2
cytoskeleton 2
nucleus 2
cytosol 2
peroxisome 1
endoplasmic reticulum 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleus (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SOGA3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SOGA3: view

Pathways & Interactions for SOGA3 Gene

SuperPathways for SOGA3 Gene

No Data Available

Interacting Proteins for SOGA3 Gene

Selected Interacting proteins: Q5TF21-SOGA3_HUMAN for SOGA3 Gene via IID

Gene Ontology (GO) - Biological Process for SOGA3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010506 regulation of autophagy IEA --
genes like me logo Genes that share ontologies with SOGA3: view

No data available for Pathways by source and SIGNOR curated interactions for SOGA3 Gene

Drugs & Compounds for SOGA3 Gene

No Compound Related Data Available

Transcripts for SOGA3 Gene

mRNA/cDNA for SOGA3 Gene

(1) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SOGA3 Gene

SOGA family member 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SOGA3 Gene

No ASD Table

Relevant External Links for SOGA3 Gene

GeneLoc Exon Structure for
SOGA3
ECgene alternative splicing isoforms for
SOGA3

Expression for SOGA3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SOGA3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for SOGA3 Gene

This gene is overexpressed in Breast (25.4), Fetal Brain (15.4), Frontal cortex (13.0), and Liver, secretome (7.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for SOGA3 Gene



NURSA nuclear receptor signaling pathways regulating expression of SOGA3 Gene:

SOGA3

SOURCE GeneReport for Unigene cluster for SOGA3 Gene:

Hs.319247

Evidence on tissue expression from TISSUES for SOGA3 Gene

  • Nervous system(4.3)
genes like me logo Genes that share expression patterns with SOGA3: view

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOGA3 Gene

Orthologs for SOGA3 Gene

This gene was present in the common ancestor of animals.

Orthologs for SOGA3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SOGA3 33
  • 99.33 (n)
-- 34
  • 99 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 34
  • 93 (a)
OneToMany
SOGA3 33
  • 92.06 (n)
dog
(Canis familiaris)
Mammalia SOGA3 33
  • 90.63 (n)
-- 34
  • 89 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia LOC100363248 33
  • 87.92 (n)
mouse
(Mus musculus)
Mammalia Soga3 16 34 33
  • 87.76 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 76 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 74 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 34
  • 86 (a)
OneToMany
C3H6ORF174 33
  • 80.96 (n)
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 88 (a)
ManyToMany
-- 34
  • 80 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia soga3 33
  • 76.5 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100332515 33
  • 74.04 (n)
soga3a 34
  • 64 (a)
ManyToMany
soga3b 34
  • 61 (a)
ManyToMany
CABZ01118047.1 34
  • 11 (a)
ManyToMany
si:ch211-197l9.2 34
  • 7 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG18304 34
  • 8 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea tag-241 34
  • 7 (a)
OneToMany
Species where no ortholog for SOGA3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SOGA3 Gene

ENSEMBL:
Gene Tree for SOGA3 (if available)
TreeFam:
Gene Tree for SOGA3 (if available)

Paralogs for SOGA3 Gene

Paralogs for SOGA3 Gene

(3) SIMAP similar genes for SOGA3 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SOGA3: view

Variants for SOGA3 Gene

Sequence variations from dbSNP and Humsavar for SOGA3 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000008811 -- 127,464,796(-) A/G intron_variant
rs1000070530 -- 127,510,347(-) T/C intron_variant
rs1000086914 -- 127,517,650(-) T/C intron_variant
rs1000101934 -- 127,472,376(-) G/A intron_variant
rs1000110929 -- 127,489,895(-) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SOGA3 Gene

Variant ID Type Subtype PubMed ID
esv3610724 CNV loss 21293372

Variation tolerance for SOGA3 Gene

Residual Variation Intolerance Score: 6.19% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.30; 41.09% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SOGA3 Gene

Human Gene Mutation Database (HGMD)
SOGA3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOGA3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SOGA3 Gene

Disorders for SOGA3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SOGA3 Gene - From: HGMD and DISEASES

Disorder Aliases PubMed IDs
heart conduction disease
  • heart rhythm disease
- elite association - COSMIC cancer census association via MalaCards
Search SOGA3 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for SOGA3

genes like me logo Genes that share disorders with SOGA3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SOGA3 Gene

Publications for SOGA3 Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 3 4 58
  2. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  3. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal KB … Olsen JV (Science signaling 2015) 3 58
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 58
  5. Complementary quantitative proteomics reveals that transcription factor AP-4 mediates E-box-dependent complex formation for transcriptional repression of HDM2. (PMID: 19505873) Ku WC … Chen YJ (Molecular & cellular proteomics : MCP 2009) 3 58

Products for SOGA3 Gene

Sources for SOGA3 Gene

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