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Aliases for SOD1P3 Gene

Subcategory (RNA class) for SOD1P3 Gene

lncRNA

Aliases for SOD1P3 Gene

  • Superoxide Dismutase 1 Pseudogene 3 2 3 5
  • Superoxide Dismutase 1, Soluble Pseudogene 3 2

External Ids for SOD1P3 Gene

ORGUL Members for SOD1P3 Gene

Previous GeneCards Identifiers for SOD1P3 Gene

  • GC08M126965
  • GC08M126142
  • GC08M126211
  • GC08M126217
  • GC08M126221
  • GC08M126226
  • GC08M126231
  • GC08M126239

Summaries for SOD1P3 Gene

GeneCards Summary for SOD1P3 Gene

SOD1P3 (Superoxide Dismutase 1 Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for SOD1P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOD1P3 Gene

Genomics for SOD1P3 Gene

GeneHancer (GH) Regulatory Elements for SOD1P3 Gene

Promoters and enhancers for SOD1P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I125943 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.8 +3.5 3495 10 CEBPG IRF9 GATA3 ZNF316 ZNF766 POLR2A ATF7 MAFK RUNX3 CEBPB GC08P125952 LINC00861 SOD1P3 RNU6-442P
GH08I125970 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 -19.4 -19365 3.2 CTCF SRF RFX1 ELK1 HLF BMI1 FOXA1 SOD1P3 ENSG00000254227
GH08I125967 Enhancer 0.8 Ensembl ENCODE 0.4 -16.5 -16543 1.9 JUN HLF CEBPB MNT CEBPG EP300 FOSL1 JUND CEBPA FOS SOD1P3 ENSG00000254227
GH08I125986 Enhancer 0.8 Ensembl ENCODE 0.3 -34.8 -34759 2 CTCF ATF1 TEAD1 TEAD4 TAL1 CBFA2T3 PPARG TEAD3 NCOR1 HMBOX1 RNU6-442P ENSG00000254227 SOD1P3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SOD1P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SOD1P3 Gene

Genomic Locations for SOD1P3 Gene
chr8:125,951,861-125,952,314
(GRCh38/hg38)
Size:
454 bases
Orientation:
Minus strand
chr8:126,964,105-126,964,558
(GRCh37/hg19)

Genomic View for SOD1P3 Gene

Genes around SOD1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOD1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOD1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SOD1P3 Gene

Proteins for SOD1P3 Gene

Post-translational modifications for SOD1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOD1P3 Gene

Domains & Families for SOD1P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOD1P3 Gene

Function for SOD1P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOD1P3 Gene

Localization for SOD1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOD1P3 Gene

Pathways & Interactions for SOD1P3 Gene

SuperPathways for SOD1P3 Gene

No Data Available

Interacting Proteins for SOD1P3 Gene

Gene Ontology (GO) - Biological Process for SOD1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SOD1P3 Gene

Drugs & Compounds for SOD1P3 Gene

No Compound Related Data Available

Transcripts for SOD1P3 Gene

mRNA/cDNA for SOD1P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SOD1P3 Gene

No ASD Table

Relevant External Links for SOD1P3 Gene

GeneLoc Exon Structure for
SOD1P3
ECgene alternative splicing isoforms for
SOD1P3

Expression for SOD1P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SOD1P3 Gene

mRNA differential expression in normal tissues according to GTEx for SOD1P3 Gene

This gene is overexpressed in Whole Blood (x12.0), Lung (x5.3), and Spleen (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of SOD1P3 Gene:

SOD1P3
genes like me logo Genes that share expression patterns with SOD1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOD1P3 Gene

Orthologs for SOD1P3 Gene

Evolution for SOD1P3 Gene

ENSEMBL:
Gene Tree for SOD1P3 (if available)
TreeFam:
Gene Tree for SOD1P3 (if available)

No data available for Orthologs for SOD1P3 Gene

Paralogs for SOD1P3 Gene

No data available for Paralogs for SOD1P3 Gene

Variants for SOD1P3 Gene

Additional Variant Information for SOD1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOD1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SOD1P3 Gene

Disorders for SOD1P3 Gene

No disorders were found for SOD1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SOD1P3 Gene

Publications for SOD1P3 Gene

No publications were found for SOD1P3 Gene.

Products for SOD1P3 Gene

Sources for SOD1P3 Gene

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