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Aliases for SOD1P2 Gene

Subcategory (RNA class) for SOD1P2 Gene

lncRNA

Aliases for SOD1P2 Gene

  • Superoxide Dismutase 1 Pseudogene 2 2 3 5
  • Superoxide Dismutase 1, Soluble Pseudogene 2 2

External Ids for SOD1P2 Gene

ORGUL Members for SOD1P2 Gene

Summaries for SOD1P2 Gene

GeneCards Summary for SOD1P2 Gene

SOD1P2 (Superoxide Dismutase 1 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for SOD1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOD1P2 Gene

Genomics for SOD1P2 Gene

GeneHancer (GH) Regulatory Elements for SOD1P2 Gene

Promoters and enhancers for SOD1P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I051109 Enhancer 1 VISTA ENCODE 0.8 +4.8 4782 4.8 NR2F1 HLF ZFP64 EBF1 ATF2 ZNF48 RAD21 SCRT2 HNF4G CREB1 SOD1P2 LOC105371253
GH16I051119 Enhancer 0.9 ENCODE 0.4 +12.8 12770 1.8 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 RXRA SP5 REST SOD1P2 LOC105371253
GH16I051129 Enhancer 0.6 FANTOM5 0.3 +21.7 21653 0.3 ZSCAN4 ZNF580 KLF17 MAX HNF4A WT1 YY1 SALL1 LOC105371253 SOD1P2
GH16I051134 Enhancer 0.6 Ensembl ENCODE 0.3 +27.0 27046 1.7 HLF SIN3A PRDM1 LOC105371253 SOD1P2
GH16I051132 Enhancer 0.6 ENCODE 0.3 +25.1 25114 0.2 ZEB2 ATF2 ZNF843 NFIL3 ZFP69B ZNF335 PRDM6 TCF7 PRDM10 WT1 LOC105371253 SOD1P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SOD1P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SOD1P2 Gene

Genomic Locations for SOD1P2 Gene
chr16:51,107,571-51,108,021
(GRCh38/hg38)
Size:
451 bases
Orientation:
Plus strand
chr16:51,141,128-51,141,934
(GRCh37/hg19)

Genomic View for SOD1P2 Gene

Genes around SOD1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOD1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOD1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOD1P2 Gene

Proteins for SOD1P2 Gene

Post-translational modifications for SOD1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOD1P2 Gene

Domains & Families for SOD1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOD1P2 Gene

Function for SOD1P2 Gene

Phenotypes From GWAS Catalog for SOD1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOD1P2 Gene

Localization for SOD1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOD1P2 Gene

Pathways & Interactions for SOD1P2 Gene

SuperPathways for SOD1P2 Gene

No Data Available

Interacting Proteins for SOD1P2 Gene

Gene Ontology (GO) - Biological Process for SOD1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SOD1P2 Gene

Drugs & Compounds for SOD1P2 Gene

No Compound Related Data Available

Transcripts for SOD1P2 Gene

mRNA/cDNA for SOD1P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SOD1P2 Gene

No ASD Table

Relevant External Links for SOD1P2 Gene

GeneLoc Exon Structure for
SOD1P2
ECgene alternative splicing isoforms for
SOD1P2

Expression for SOD1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SOD1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SOD1P2 Gene:

SOD1P2
genes like me logo Genes that share expression patterns with SOD1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOD1P2 Gene

Orthologs for SOD1P2 Gene

Evolution for SOD1P2 Gene

ENSEMBL:
Gene Tree for SOD1P2 (if available)
TreeFam:
Gene Tree for SOD1P2 (if available)

No data available for Orthologs for SOD1P2 Gene

Paralogs for SOD1P2 Gene

No data available for Paralogs for SOD1P2 Gene

Variants for SOD1P2 Gene

Additional Variant Information for SOD1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOD1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SOD1P2 Gene

Disorders for SOD1P2 Gene

No disorders were found for SOD1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SOD1P2 Gene

Publications for SOD1P2 Gene

No publications were found for SOD1P2 Gene.

Products for SOD1P2 Gene

Sources for SOD1P2 Gene

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