SOD1P1 Gene (Pseudogene)

Superoxide Dismutase 1 Pseudogene 1

GC06M053196
GIFtS:
5
See more...

Aliases for SOD1P1 Gene

Aliases for SOD1P1 Gene

  • Superoxide Dismutase 1 Pseudogene 1 2 3 5
  • Superoxide Dismutase 1, Soluble Pseudogene 1 2 3
  • SOD1P1 5

External Ids for SOD1P1 Gene

Previous GeneCards Identifiers for SOD1P1 Gene

  • GC06M053065

Summaries for SOD1P1 Gene

GeneCards Summary for SOD1P1 Gene

SOD1P1 (Superoxide Dismutase 1 Pseudogene 1) is a Pseudogene.

Additional gene information for SOD1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SOD1P1 Gene

Genomics for SOD1P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SOD1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J053192 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 +2.8 2758 4.4 PRDM1 SP1 ZNF316 FOXA2 MAFG RAD21 PRDM10 SMARCA4 MAFF HNF4A HSALNG0050654 ENSG00000218713 ENSG00000216775 SOD1P1 lnc-GCM1-2 GCM1 MN298114-205 CILK1
GH06J053199 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -5.2 -5242 9.2 ATF7 IKZF2 TOE1 EED HMBOX1 DPF2 RUNX3 RAD51 CBFB ZNF207 RF00017-5600 lnc-GCM1-3 ENSG00000218713 ENSG00000216775 SOD1P1 lnc-GCM1-2 GCM1 MN298114-205 CILK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SOD1P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SOD1P1 Gene

Genomic Locations for SOD1P1 Gene
chr6:53,196,720-53,197,159
(GRCh38/hg38)
Size:
440 bases
Orientation:
Minus strand
chr6:53,061,518-53,061,957
(GRCh37/hg19)
Size:
440 bases
Orientation:
Minus strand

Genomic View for SOD1P1 Gene

Genes around SOD1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOD1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOD1P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SOD1P1 Gene

Proteins for SOD1P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SOD1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOD1P1 Gene

Domains & Families for SOD1P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SOD1P1 Gene

Function for SOD1P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOD1P1 Gene

Localization for SOD1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOD1P1 Gene

Pathways & Interactions for SOD1P1 Gene

PathCards logo

SuperPathways for SOD1P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SOD1P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SOD1P1 Gene

Drugs & Compounds for SOD1P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SOD1P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SOD1P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SOD1P1 Gene

No ASD Table

Relevant External Links for SOD1P1 Gene

GeneLoc Exon Structure for
SOD1P1

Expression for SOD1P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SOD1P1 Gene

mRNA expression in normal human tissues for SOD1P1 Gene
mRNA expression by GTEx for SOD1P1 Gene
genes like me logo Genes that share expression patterns with SOD1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOD1P1 Gene

Orthologs for SOD1P1 Gene

Evolution for SOD1P1 Gene

ENSEMBL:
Gene Tree for SOD1P1 (if available)
TreeFam:
Gene Tree for SOD1P1 (if available)

No data available for Orthologs for SOD1P1 Gene

Paralogs for SOD1P1 Gene

No data available for Paralogs for SOD1P1 Gene

Variants for SOD1P1 Gene

Additional Variant Information for SOD1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOD1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SOD1P1 Gene

Disorders for SOD1P1 Gene

No disorders were found for SOD1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SOD1P1 Gene

Publications for SOD1P1 Gene

No publications were found for SOD1P1 Gene.

ExternalLinks

View latest publications for SOD1P1 gene in Mastermind

Products for SOD1P1 Gene

Sources for SOD1P1 Gene