Aliases for SOCS2-AS1 Gene

Subcategory (RNA class) for SOCS2-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for SOCS2-AS1 Gene

  • SOCS2 Antisense RNA 1 2 3 5
  • SOCS2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SOCS2-AS1 2 170
  • HSALNG0093119 169
  • NONHSAG011928 94

External Ids for SOCS2-AS1 Gene

Previous GeneCards Identifiers for SOCS2-AS1 Gene

  • GC12M093938
  • GC12M093542

Summaries for SOCS2-AS1 Gene

GeneCards Summary for SOCS2-AS1 Gene

SOCS2-AS1 (SOCS2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SOCS2-AS1 include Prostate Cancer.

Additional gene information for SOCS2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SOCS2-AS1 Gene

Genomics for SOCS2-AS1 Gene

GeneHancer (GH) Regulatory Elements for SOCS2-AS1 Gene

Promoters and enhancers for SOCS2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SOCS2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SOCS2-AS1 Gene

Genomic Locations for SOCS2-AS1 Gene
chr12:93,514,961-93,571,768
(GRCh38/hg38)
Size:
56,808 bases
Orientation:
Minus strand
chr12:93,936,239-93,965,544
(GRCh37/hg19)
Size:
29,306 bases
Orientation:
Minus strand

Genomic View for SOCS2-AS1 Gene

Genes around SOCS2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOCS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOCS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOCS2-AS1 Gene

Proteins for SOCS2-AS1 Gene

Post-translational modifications for SOCS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOCS2-AS1 Gene

Domains & Families for SOCS2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SOCS2-AS1 Gene

Function for SOCS2-AS1 Gene

Phenotypes From GWAS Catalog for SOCS2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOCS2-AS1 Gene

Localization for SOCS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOCS2-AS1 Gene

Pathways & Interactions for SOCS2-AS1 Gene

PathCards logo

SuperPathways for SOCS2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SOCS2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SOCS2-AS1 Gene

Drugs & Compounds for SOCS2-AS1 Gene

No Compound Related Data Available

Transcripts for SOCS2-AS1 Gene

mRNA/cDNA for SOCS2-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) NONCODE transcripts :
(21) RNACentral transcripts :
(17) LncBook transcripts :
(21) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SOCS2-AS1 Gene

No ASD Table

Relevant External Links for SOCS2-AS1 Gene

GeneLoc Exon Structure for
SOCS2-AS1
ECgene alternative splicing isoforms for
SOCS2-AS1

Expression for SOCS2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SOCS2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SOCS2-AS1 Gene

This gene is overexpressed in Prostate (x6.7), Cervix - Ectocervix (x4.4), and Uterus (x4.1).

SOURCE GeneReport for Unigene cluster for SOCS2-AS1 Gene:

Hs.602278
genes like me logo Genes that share expression patterns with SOCS2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOCS2-AS1 Gene

Orthologs for SOCS2-AS1 Gene

Evolution for SOCS2-AS1 Gene

ENSEMBL:
Gene Tree for SOCS2-AS1 (if available)
TreeFam:
Gene Tree for SOCS2-AS1 (if available)

No data available for Orthologs for SOCS2-AS1 Gene

Paralogs for SOCS2-AS1 Gene

No data available for Paralogs for SOCS2-AS1 Gene

Variants for SOCS2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SOCS2-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000462857 -- 93,570,984(-) G/C intron_variant
rs1000514543 -- 93,571,249(-) C/T intron_variant
rs1000578390 -- 93,570,783(-) T/A/G intron_variant
rs1000964227 -- 93,569,696(-) G/A/T intron_variant
rs1001078695 -- 93,569,910(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SOCS2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2791n54 CNV loss 21841781
dgv2792n54 CNV gain 21841781
esv25615 CNV loss 19812545
nsv559778 CNV gain 21841781
nsv7234 OTHER inversion 18451855

Additional Variant Information for SOCS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOCS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SOCS2-AS1 Gene

Disorders for SOCS2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SOCS2-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SOCS2-AS1

genes like me logo Genes that share disorders with SOCS2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SOCS2-AS1 Gene

Publications for SOCS2-AS1 Gene

  1. Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term. (PMID: 24168098) Romero R … Lipovich L (The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 2014) 2 3 56
  2. Androgen-induced Long Noncoding RNA (lncRNA) SOCS2-AS1 Promotes Cell Growth and Inhibits Apoptosis in Prostate Cancer Cells. (PMID: 27342777) Misawa A … Inoue S (The Journal of biological chemistry 2016) 3 56
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for SOCS2-AS1 Gene

Sources for SOCS2-AS1 Gene