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Aliases for SOCS2-AS1 Gene

Subcategory (RNA class) for SOCS2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SOCS2-AS1 Gene

  • SOCS2 Antisense RNA 1 2 3 5
  • SOCS2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SOCS2-AS1 Gene

Previous GeneCards Identifiers for SOCS2-AS1 Gene

  • GC12M093938

Summaries for SOCS2-AS1 Gene

GeneCards Summary for SOCS2-AS1 Gene

SOCS2-AS1 (SOCS2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SOCS2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOCS2-AS1 Gene

Genomics for SOCS2-AS1 Gene

GeneHancer (GH) Regulatory Elements for SOCS2-AS1 Gene

Promoters and enhancers for SOCS2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I093569 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.0 40 5.1 FEZF1 YY1 ZNF213 E2F8 ZNF143 SP3 ZNF610 GLIS1 NBN NR2C1 SOCS2 SOCS2-AS1 ENSG00000271382 EEA1
GH12I093740 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.9 -170.5 -170499 4.3 PKNOX1 SMAD1 FOXA2 ARNT SIN3A FEZF1 ZNF2 YY1 ZNF766 ZNF143 SOCS2 SOCS2-AS1 ENSG00000258172 ENSG00000258365 NUDT4 GC12M093698 LOC101928731 CRADD
GH12I093590 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.6 -21.3 -21292 5.4 PKNOX1 SMAD1 ATF1 SIN3A YY1 TCF12 POLR2B ZNF766 KLF7 ATF7 ENSG00000258365 SOCS2 SOCS2-AS1 LOC642969
GH12I094098 Enhancer 1.5 FANTOM5 Ensembl ENCODE 11.6 -528.9 -528930 4.6 PKNOX1 ARNT ARID4B SIN3A IRF4 ZNF416 ZNF143 FOS REST SMARCA4 SOCS2 SOCS2-AS1 PLXNC1 LOC441644 LOC105369913
GH12I093503 Enhancer 0.6 ENCODE 12.3 +68.5 68528 0.2 CTCF ZNF654 DACH1 MAFG REST RAD21 CC2D1A ZNF664 MAFF ARID2 SOCS2 SOCS2-AS1 RN7SL737P MRPL42
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SOCS2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SOCS2-AS1 Gene

Genomic Locations for SOCS2-AS1 Gene
29,306 bases
Minus strand

Genomic View for SOCS2-AS1 Gene

Genes around SOCS2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOCS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOCS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOCS2-AS1 Gene

Proteins for SOCS2-AS1 Gene

Post-translational modifications for SOCS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOCS2-AS1 Gene

Domains & Families for SOCS2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOCS2-AS1 Gene

Function for SOCS2-AS1 Gene

Phenotypes From GWAS Catalog for SOCS2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOCS2-AS1 Gene

Localization for SOCS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOCS2-AS1 Gene

Pathways & Interactions for SOCS2-AS1 Gene

SuperPathways for SOCS2-AS1 Gene

No Data Available

Interacting Proteins for SOCS2-AS1 Gene

Gene Ontology (GO) - Biological Process for SOCS2-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SOCS2-AS1 Gene

Drugs & Compounds for SOCS2-AS1 Gene

No Compound Related Data Available

Transcripts for SOCS2-AS1 Gene

mRNA/cDNA for SOCS2-AS1 Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SOCS2-AS1 Gene

SOCS2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SOCS2-AS1 Gene

No ASD Table

Relevant External Links for SOCS2-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SOCS2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SOCS2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SOCS2-AS1 Gene

This gene is overexpressed in Prostate (x6.7), Cervix - Ectocervix (x4.4), and Uterus (x4.1).

SOURCE GeneReport for Unigene cluster for SOCS2-AS1 Gene:

genes like me logo Genes that share expression patterns with SOCS2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOCS2-AS1 Gene

Orthologs for SOCS2-AS1 Gene

Evolution for SOCS2-AS1 Gene

Gene Tree for SOCS2-AS1 (if available)
Gene Tree for SOCS2-AS1 (if available)

No data available for Orthologs for SOCS2-AS1 Gene

Paralogs for SOCS2-AS1 Gene

No data available for Paralogs for SOCS2-AS1 Gene

Variants for SOCS2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SOCS2-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000462857 -- 93,570,984(-) G/C intron_variant
rs1000514543 -- 93,571,249(-) C/T intron_variant
rs1000578390 -- 93,570,783(-) T/A/G intron_variant
rs1000964227 -- 93,569,696(-) G/T intron_variant
rs1001078695 -- 93,569,910(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SOCS2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER inversion 18451855
nsv559778 CNV gain 21841781
esv25615 CNV loss 19812545
dgv2792n54 CNV gain 21841781
dgv2791n54 CNV loss 21841781

Additional Variant Information for SOCS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SOCS2-AS1 Gene

Disorders for SOCS2-AS1 Gene

Additional Disease Information for SOCS2-AS1

No disorders were found for SOCS2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SOCS2-AS1 Gene

Publications for SOCS2-AS1 Gene

  1. Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term. (PMID: 24168098) Romero R … Lipovich L (The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 2014) 2 3 58
  2. Androgen-induced Long Noncoding RNA (lncRNA) SOCS2-AS1 Promotes Cell Growth and Inhibits Apoptosis in Prostate Cancer Cells. (PMID: 27342777) Misawa A … Inoue S (The Journal of biological chemistry 2016) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SOCS2-AS1 Gene

Sources for SOCS2-AS1 Gene

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