Aliases for SNX5P1 Gene

Aliases for SNX5P1 Gene

  • Sorting Nexin 5 Pseudogene 1 2 3 5

External Ids for SNX5P1 Gene

Previous GeneCards Identifiers for SNX5P1 Gene

  • GC04P077266

Summaries for SNX5P1 Gene

GeneCards Summary for SNX5P1 Gene

SNX5P1 (Sorting Nexin 5 Pseudogene 1) is a Pseudogene.

Additional gene information for SNX5P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNX5P1 Gene

Genomics for SNX5P1 Gene

GeneHancer (GH) Regulatory Elements for SNX5P1 Gene

Promoters and enhancers for SNX5P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J076341 Enhancer 0.8 ENCODE 0.7 -3.3 -3305 0.2 JUND FOS REST JUN MEF2A HDAC3 NCOR1 CEBPG ATF3 CEBPB SNX5P1 ENSG00000287401 CCDC158
GH04J076312 Enhancer 0.7 Ensembl 0.3 -32.3 -32347 0.8 FOXA2 WT1 ZBTB17 CEBPB ZBTB33 JUND RAD21 RXRA MAX HNF4A ENSG00000287401 RNU6-1000P SCARB2 FAM47E SNX5P1
GH04J076355 Enhancer 0.4 Ensembl 0.4 +10.7 10652 0.4 ZNF316 MAFF MAFK EMSY RF00026-796 RNU6-1000P SNX5P1 CCDC158
GH04J076321 Enhancer 0.5 Ensembl 0.4 -20.9 -20948 4.4 ATF2 CREB1 JUND ATF3 JUN ATF7 STBD1 RNU6-1000P FAM47E ENSG00000287401 SNX5P1 CCDC158
GH04J076354 Enhancer 0.3 Ensembl 0.4 +10.2 10153 0.2 RUNX3 RF00026-796 RNU6-1000P SNX5P1 CCDC158
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNX5P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNX5P1 Gene

Genomic Locations for SNX5P1 Gene
chr4:76,344,548-76,345,734
(GRCh38/hg38)
Size:
1,187 bases
Orientation:
Plus strand
chr4:77,265,701-77,266,887
(GRCh37/hg19)
Size:
1,187 bases
Orientation:
Plus strand

Genomic View for SNX5P1 Gene

Genes around SNX5P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNX5P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNX5P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNX5P1 Gene

Proteins for SNX5P1 Gene

Post-translational modifications for SNX5P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNX5P1 Gene

Domains & Families for SNX5P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNX5P1 Gene

Function for SNX5P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNX5P1 Gene

Localization for SNX5P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNX5P1 Gene

Pathways & Interactions for SNX5P1 Gene

PathCards logo

SuperPathways for SNX5P1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNX5P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNX5P1 Gene

Drugs & Compounds for SNX5P1 Gene

No Compound Related Data Available

Transcripts for SNX5P1 Gene

mRNA/cDNA for SNX5P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNX5P1 Gene

No ASD Table

Relevant External Links for SNX5P1 Gene

GeneLoc Exon Structure for
SNX5P1

Expression for SNX5P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNX5P1 Gene

genes like me logo Genes that share expression patterns with SNX5P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNX5P1 Gene

Orthologs for SNX5P1 Gene

Evolution for SNX5P1 Gene

ENSEMBL:
Gene Tree for SNX5P1 (if available)
TreeFam:
Gene Tree for SNX5P1 (if available)

No data available for Orthologs for SNX5P1 Gene

Paralogs for SNX5P1 Gene

No data available for Paralogs for SNX5P1 Gene

Variants for SNX5P1 Gene

Additional Variant Information for SNX5P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNX5P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNX5P1 Gene

Disorders for SNX5P1 Gene

No disorders were found for SNX5P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNX5P1 Gene

Publications for SNX5P1 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 54

No data available for Mastermind for SNX5P1 Gene

Products for SNX5P1 Gene

Sources for SNX5P1 Gene