Aliases for SNX29P1 Gene

Aliases for SNX29P1 Gene

  • Sorting Nexin 29 Pseudogene 1 2 3 5
  • RUN Domain Containing 2B 2 3
  • Putative RUN Domain-Containing Protein 2B 3
  • Sorting Nexin 29 Protein Pseudogene 1 3
  • RUNDC2-Like Protein 3
  • RUNDC2B 3
  • RUNDC2L 3
  • SNX29P1 5

External Ids for SNX29P1 Gene

Previous HGNC Symbols for SNX29P1 Gene

  • RUNDC2B

Previous GeneCards Identifiers for SNX29P1 Gene

  • GC16P021358

Summaries for SNX29P1 Gene

GeneCards Summary for SNX29P1 Gene

SNX29P1 (Sorting Nexin 29 Pseudogene 1) is a Pseudogene.

Additional gene information for SNX29P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNX29P1 Gene

Genomics for SNX29P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNX29P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J021347 Enhancer 0.3 Ensembl 600.7 -1.8 -1762 0.8 SCRT2 ENSG00000257403 SNX29P1 piR-38475-001 ACSM5 CRYM CRYM-AS1 NPIPB3
GH16J021349 Enhancer 0.2 Ensembl 600.7 -0.4 -363 0.8 ENSG00000257403 SNX29P1 piR-38475-001 CRYM CRYM-AS1 NPIPB3
GH16J021356 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.4 +7.3 7265 0.8 IKZF2 DPF2 GATAD2B ELF1 IKZF1 SPI1 SMARCA5 NBN BHLHE40 DNAH3 CRYM SNX29P1 piR-35674-182 CRYM-AS1 NPIPB3
GH16J021359 Enhancer 0.9 ENCODE dbSUPER 0.4 +11.0 11009 1.9 BACH1 LARP7 ZNF143 ZSCAN4 TCF12 IKZF2 TRIM22 PKNOX1 EED ARID3A SNX29P1 piR-35674-182 CRYM CRYM-AS1 NPIPB3
GH16J021358 Enhancer 0.9 ENCODE dbSUPER 0.4 +9.3 9273 1.1 BACH1 LARP7 TCF12 IKZF2 TRIM22 PKNOX1 ARID3A DPF2 RELB GATAD2B SNX29P1 piR-35674-182 CRYM CRYM-AS1 NPIPB3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNX29P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNX29P1 Gene

Genomic Locations for SNX29P1 Gene
chr16:21,349,363-21,386,064
(GRCh38/hg38)
Size:
36,702 bases
Orientation:
Plus strand
chr16:21,358,484-21,403,412
(GRCh37/hg19)
Size:
44,929 bases
Orientation:
Plus strand

Genomic View for SNX29P1 Gene

Genes around SNX29P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNX29P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNX29P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNX29P1 Gene

Proteins for SNX29P1 Gene

Post-translational modifications for SNX29P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNX29P1 Gene

Domains & Families for SNX29P1 Gene

Suggested Antigen Peptide Sequences for SNX29P1 Gene

GenScript: Design optimal peptide antigens:
  • RUNDC2-like protein (RUN2B_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNX29P1 Gene

Function for SNX29P1 Gene

genes like me logo Genes that share phenotypes with SNX29P1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNX29P1 Gene

Localization for SNX29P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNX29P1 Gene

Pathways & Interactions for SNX29P1 Gene

PathCards logo

SuperPathways for SNX29P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNX29P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNX29P1 Gene

Drugs & Compounds for SNX29P1 Gene

No Compound Related Data Available

Transcripts for SNX29P1 Gene

mRNA/cDNA for SNX29P1 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNX29P1 Gene

No ASD Table

Relevant External Links for SNX29P1 Gene

GeneLoc Exon Structure for
SNX29P1

Expression for SNX29P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNX29P1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNX29P1

SOURCE GeneReport for Unigene cluster for SNX29P1 Gene:

Hs.443656
genes like me logo Genes that share expression patterns with SNX29P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNX29P1 Gene

Orthologs for SNX29P1 Gene

Evolution for SNX29P1 Gene

ENSEMBL:
Gene Tree for SNX29P1 (if available)
TreeFam:
Gene Tree for SNX29P1 (if available)

No data available for Orthologs for SNX29P1 Gene

Paralogs for SNX29P1 Gene

No data available for Paralogs for SNX29P1 Gene

Variants for SNX29P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNX29P1 Gene

Variant ID Type Subtype PubMed ID
dgv2800n100 CNV gain 25217958
dgv2801n100 CNV loss 25217958
esv2758636 CNV gain+loss 17122850
esv34235 CNV gain 17911159
esv3638167 CNV loss 21293372
nsv433437 CNV gain 18776910
nsv436835 CNV insertion 17901297
nsv827583 CNV loss 20364138
nsv974781 CNV duplication 23825009
nsv974782 CNV duplication 23825009
nsv984290 CNV duplication 23825009

Additional Variant Information for SNX29P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNX29P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for SNX29P1 Gene

Disorders for SNX29P1 Gene

Additional Disease Information for SNX29P1

No disorders were found for SNX29P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNX29P1 Gene

Publications for SNX29P1 Gene

  1. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PMID: 19690332) Mayya V … Han DK (Science signaling 2009) 3
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for SNX29P1 Gene

Sources for SNX29P1 Gene