Aliases for SNRPGP15 Gene

Aliases for SNRPGP15 Gene

  • Small Nuclear Ribonucleoprotein Polypeptide G Pseudogene 15 2 3 5
  • Putative Small Nuclear Ribonucleoprotein G-Like Protein 15 4
  • SNRPGP15 5

External Ids for SNRPGP15 Gene

Previous GeneCards Identifiers for SNRPGP15 Gene

  • GC19P014601

Summaries for SNRPGP15 Gene

GeneCards Summary for SNRPGP15 Gene

SNRPGP15 (Small Nuclear Ribonucleoprotein Polypeptide G Pseudogene 15) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include RNA binding.

UniProtKB/Swiss-Prot Summary for SNRPGP15 Gene

Additional gene information for SNRPGP15 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNRPGP15 Gene

Genomics for SNRPGP15 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNRPGP15 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J014489 Promoter 0.3 EPDnew 600.7 +0.7 651 0.1 SNRPGP15 lnc-PKN1-1 GIPC1 PTGER1
GH19J013860 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 18 -625.6 -625585 6.3 SP1 GATAD2A CTCF PRDM10 LEF1 IKZF1 ZNF692 POLR2A BACH1 ZHX2 NANOS3 SNRPGP15 CCDC130 ADGRL1 CACNA1A ZSWIM4 RFX1 DCAF15 C19orf57 IL27RA
GH19J014512 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 +29.2 29233 12 SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 ZNF629 REST TFE3 RFX1 TECR DNAJB1 AKAP8 CCDC130 MRI1 BRD4 DDX39A ASF1B ZNF333 NOTCH3
GH19J015416 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 +929.1 929114 3.4 SP1 HNRNPL CREB1 CTCF REST RFX1 IKZF1 ZNF692 POLR2A NFRKB AKAP8L BRD4 ZNF333 AKAP8 NOTCH3 SYDE1 SNRPGP15 TPM4 lnc-CYP4F22-1 WIZ
GH19J013905 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.6 -582.9 -582896 2 RNF2 SP1 CREB1 ZNF629 TFE3 SIX5 IKZF1 NFKBIZ POLR2A ZNF692 CC2D1A C19orf57 FJ601684-217 TRMT1 ZNF333 ASF1B CCDC130 SNRPGP15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNRPGP15 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNRPGP15 Gene

Genomic Locations for SNRPGP15 Gene
chr19:14,489,297-14,489,890
(GRCh38/hg38)
Size:
594 bases
Orientation:
Plus strand
chr19:14,599,758-14,600,691
(GRCh37/hg19)
Size:
934 bases
Orientation:
Plus strand

Genomic View for SNRPGP15 Gene

Genes around SNRPGP15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNRPGP15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNRPGP15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNRPGP15 Gene

Proteins for SNRPGP15 Gene

  • Protein details for SNRPGP15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MWD9-RUXGL_HUMAN
    Recommended name:
    Putative small nuclear ribonucleoprotein G-like protein 15
    Protein Accession:
    A8MWD9

    Protein attributes for SNRPGP15 Gene

    Size:
    76 amino acids
    Molecular mass:
    8544 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SNRPGP15 Gene

Post-translational modifications for SNRPGP15 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SNRPGP15 Gene

Domains & Families for SNRPGP15 Gene

Protein Domains for SNRPGP15 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A8MWD9

UniProtKB/Swiss-Prot:

RUXGL_HUMAN :
  • Belongs to the snRNP Sm proteins family.
Family:
  • Belongs to the snRNP Sm proteins family.
genes like me logo Genes that share domains with SNRPGP15: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SNRPGP15 Gene

Function for SNRPGP15 Gene

Molecular function for SNRPGP15 Gene

UniProtKB/Swiss-Prot Function:
Associated with snRNP U1, U2, U4/U6 and U5.

Phenotypes From GWAS Catalog for SNRPGP15 Gene

Gene Ontology (GO) - Molecular Function for SNRPGP15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IEA --
genes like me logo Genes that share ontologies with SNRPGP15: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNRPGP15 Gene

Localization for SNRPGP15 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SNRPGP15 Gene

Gene Ontology (GO) - Cellular Components for SNRPGP15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005682 U5 snRNP IBA 21873635
GO:0005685 U1 snRNP IBA 21873635
GO:0005686 U2 snRNP IBA 21873635
GO:0005687 U4 snRNP IBA 21873635
GO:0005689 U12-type spliceosomal complex IBA 21873635
genes like me logo Genes that share ontologies with SNRPGP15: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNRPGP15 Gene

Pathways & Interactions for SNRPGP15 Gene

PathCards logo

SuperPathways for SNRPGP15 Gene

No Data Available

Interacting Proteins for SNRPGP15 Gene

Selected Interacting proteins: A8MWD9-RUXGL_HUMAN for SNRPGP15 Gene via IID

Gene Ontology (GO) - Biological Process for SNRPGP15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000387 spliceosomal snRNP assembly IEA --
GO:0000398 mRNA splicing, via spliceosome IBA 21873635
genes like me logo Genes that share ontologies with SNRPGP15: view

No data available for Pathways by source and SIGNOR curated interactions for SNRPGP15 Gene

Drugs & Compounds for SNRPGP15 Gene

No Compound Related Data Available

Transcripts for SNRPGP15 Gene

mRNA/cDNA for SNRPGP15 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNRPGP15 Gene

No ASD Table

Relevant External Links for SNRPGP15 Gene

GeneLoc Exon Structure for
SNRPGP15

Expression for SNRPGP15 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNRPGP15 Gene

Protein differential expression in normal tissues from HIPED for SNRPGP15 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for SNRPGP15 Gene



Protein tissue co-expression partners for SNRPGP15 Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNRPGP15

genes like me logo Genes that share expression patterns with SNRPGP15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNRPGP15 Gene

Orthologs for SNRPGP15 Gene

Evolution for SNRPGP15 Gene

ENSEMBL:
Gene Tree for SNRPGP15 (if available)
TreeFam:
Gene Tree for SNRPGP15 (if available)

No data available for Orthologs for SNRPGP15 Gene

Paralogs for SNRPGP15 Gene

No data available for Paralogs for SNRPGP15 Gene

Variants for SNRPGP15 Gene

Additional Variant Information for SNRPGP15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNRPGP15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNRPGP15 Gene

Disorders for SNRPGP15 Gene

No disorders were found for SNRPGP15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNRPGP15 Gene

Publications for SNRPGP15 Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  3. Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells. (PMID: 29509190) Giurato G … Tarallo R (Scientific data 2018) 3
  4. The HIV-1 Tat protein recruits a ubiquitin ligase to reorganize the 7SK snRNP for transcriptional activation. (PMID: 29845934) Faust TB … Frankel AD (eLife 2018) 3
  5. BAP1 regulation of the key adaptor protein NCoR1 is critical for γ-globin gene repression. (PMID: 30463901) Yu L … Engel JD (Genes & development 2018) 3

Products for SNRPGP15 Gene

Sources for SNRPGP15 Gene