Aliases for SNRPFP1 Gene

Aliases for SNRPFP1 Gene

  • Small Nuclear Ribonucleoprotein Polypeptide F Pseudogene 1 2 3 5
  • DJ1041C10.2 2 3
  • SNRPFP1 5

External Ids for SNRPFP1 Gene

Previous GeneCards Identifiers for SNRPFP1 Gene

  • GC20U990221
  • GC20M048984
  • GC20M049031
  • GC20M047779
  • GC20M048347
  • GC20M045097

Summaries for SNRPFP1 Gene

GeneCards Summary for SNRPFP1 Gene

SNRPFP1 (Small Nuclear Ribonucleoprotein Polypeptide F Pseudogene 1) is a Pseudogene.

Additional gene information for SNRPFP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNRPFP1 Gene

Genomics for SNRPFP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNRPFP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J049724 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.8 2838 15 CEBPG TFE3 RFX1 FOXA1 GABPA TOE1 CEBPA ZNF561 SOX13 CEBPB lnc-SLC9A8-1 DDX27 SNAI1 ENSG00000232043 B4GALT5 SLC9A8 CEBPB ZNFX1 KRT18P4 PEDS1
GH20J049747 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.5 -19462 4.8 GATAD2A TFE3 ZNF512 LEF1 IKZF1 NFKBIZ ZNF7 BACH1 JUND PRDM1 SNAI1 SLC9A8 DDX27 B4GALT5 CEBPB ZNFX1 ENSG00000232043 PEDS1 RNF114 HSALNG0130687
GH20J049742 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -12.8 -12837 1.6 ZIC2 SCRT2 ZBTB17 SCRT1 ZFHX2 POLR3A GTF3C2 BCL6 ZNF579 EGR2 B4GALT5 HSALNG0130687 SNRPFP1 lnc-SLC9A8-1 SLC9A8
GH20J049740 Enhancer 0.4 Ensembl 0.4 -11.2 -11162 1.4 CEBPA CEBPB HLF CEBPG PELATON HSALNG0130687 SNRPFP1 lnc-SLC9A8-1 B4GALT5 SLC9A8
GH20J049738 Enhancer 0.3 Ensembl 0.4 -9.2 -9162 0.6 AHR SNRPFP1 lnc-SLC9A8-1 HSALNG0130687 B4GALT5 SLC9A8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNRPFP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNRPFP1 Gene

Genomic Locations for SNRPFP1 Gene
chr20:49,729,572-49,729,939
(GRCh38/hg38)
Size:
368 bases
Orientation:
Minus strand
chr20:48,346,127-48,346,494
(GRCh37/hg19)
Size:
368 bases
Orientation:
Minus strand

Genomic View for SNRPFP1 Gene

Genes around SNRPFP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNRPFP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNRPFP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNRPFP1 Gene

Proteins for SNRPFP1 Gene

Post-translational modifications for SNRPFP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNRPFP1 Gene

Domains & Families for SNRPFP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNRPFP1 Gene

Function for SNRPFP1 Gene

Phenotypes From GWAS Catalog for SNRPFP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNRPFP1 Gene

Localization for SNRPFP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNRPFP1 Gene

Pathways & Interactions for SNRPFP1 Gene

PathCards logo

SuperPathways for SNRPFP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNRPFP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNRPFP1 Gene

Drugs & Compounds for SNRPFP1 Gene

No Compound Related Data Available

Transcripts for SNRPFP1 Gene

mRNA/cDNA for SNRPFP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNRPFP1 Gene

No ASD Table

Relevant External Links for SNRPFP1 Gene

GeneLoc Exon Structure for
SNRPFP1

Expression for SNRPFP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNRPFP1 Gene

genes like me logo Genes that share expression patterns with SNRPFP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNRPFP1 Gene

Orthologs for SNRPFP1 Gene

Evolution for SNRPFP1 Gene

ENSEMBL:
Gene Tree for SNRPFP1 (if available)
TreeFam:
Gene Tree for SNRPFP1 (if available)

No data available for Orthologs for SNRPFP1 Gene

Paralogs for SNRPFP1 Gene

No data available for Paralogs for SNRPFP1 Gene

Variants for SNRPFP1 Gene

Additional Variant Information for SNRPFP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNRPFP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNRPFP1 Gene

Disorders for SNRPFP1 Gene

No disorders were found for SNRPFP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNRPFP1 Gene

Publications for SNRPFP1 Gene

No publications were found for SNRPFP1 Gene.

No data available for Mastermind for SNRPFP1 Gene

Products for SNRPFP1 Gene

Sources for SNRPFP1 Gene