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Aliases for SNRK-AS1 Gene

Subcategory (RNA class) for SNRK-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNRK-AS1 Gene

  • SNRK Antisense RNA 1 2 3 5
  • SNRK Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SNRK-AS1 Gene

Previous GeneCards Identifiers for SNRK-AS1 Gene

  • GC00U933780

Summaries for SNRK-AS1 Gene

GeneCards Summary for SNRK-AS1 Gene

SNRK-AS1 (SNRK Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNRK-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNRK-AS1 Gene

Genomics for SNRK-AS1 Gene

GeneHancer (GH) Regulatory Elements for SNRK-AS1 Gene

Promoters and enhancers for SNRK-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I042599 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 20.7 +750.8 750827 3.8 HDGF HNRNPUL1 PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 NKTR SEC22C SNRK-AS1 LOC101928323 ZBTB47
GH03I042580 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 21.9 +769.9 769870 2.7 HDGF PKNOX1 CLOCK ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SEC22C SS18L2 NKTR SNRK-AS1 ENSG00000271941
GH03I042802 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 13.2 +547.8 547838 3.1 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ACKR2 ENSG00000280571 HIGD1A NKTR ZNF662 SNRK-AS1 LINC02158 CCDC13 GC03M042803 ENSG00000235288
GH03I042650 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.2 +698.1 698134 6.4 HDGF PKNOX1 ARNT ZFP64 SIN3A DMAP1 POLR2B CBX5 FOS SP3 LOC101928323 ZBTB47 NKTR SEC22C SNRK-AS1 SS18L2 HHATL FAM198A
GH03I042501 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.1 +845.0 844953 10.5 PKNOX1 ATF1 SIN3A FOS SP3 RXRA NFYC REST SMARCA4 PBX2 VIPR1 NKTR SEC22C VIPR1-AS1 SNRK-AS1 SS18L2 ZNF662 CCDC13-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNRK-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNRK-AS1 Gene

Genomic Locations for SNRK-AS1 Gene
chr3:43,346,919-43,351,962
(GRCh38/hg38)
Size:
5,044 bases
Orientation:
Minus strand
chr3:43,391,136-43,393,454
(GRCh37/hg19)

Genomic View for SNRK-AS1 Gene

Genes around SNRK-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNRK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNRK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNRK-AS1 Gene

Proteins for SNRK-AS1 Gene

Post-translational modifications for SNRK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNRK-AS1 Gene

Domains & Families for SNRK-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNRK-AS1 Gene

Function for SNRK-AS1 Gene

Phenotypes From GWAS Catalog for SNRK-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNRK-AS1 Gene

Localization for SNRK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNRK-AS1 Gene

Pathways & Interactions for SNRK-AS1 Gene

SuperPathways for SNRK-AS1 Gene

No Data Available

Interacting Proteins for SNRK-AS1 Gene

Gene Ontology (GO) - Biological Process for SNRK-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNRK-AS1 Gene

Drugs & Compounds for SNRK-AS1 Gene

No Compound Related Data Available

Transcripts for SNRK-AS1 Gene

mRNA/cDNA for SNRK-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNRK-AS1 Gene

SNRK antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNRK-AS1 Gene

No ASD Table

Relevant External Links for SNRK-AS1 Gene

GeneLoc Exon Structure for
SNRK-AS1
ECgene alternative splicing isoforms for
SNRK-AS1

Expression for SNRK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNRK-AS1 Gene

SOURCE GeneReport for Unigene cluster for SNRK-AS1 Gene:

Hs.600984
genes like me logo Genes that share expression patterns with SNRK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNRK-AS1 Gene

Orthologs for SNRK-AS1 Gene

Evolution for SNRK-AS1 Gene

ENSEMBL:
Gene Tree for SNRK-AS1 (if available)
TreeFam:
Gene Tree for SNRK-AS1 (if available)

No data available for Orthologs for SNRK-AS1 Gene

Paralogs for SNRK-AS1 Gene

No data available for Paralogs for SNRK-AS1 Gene

Variants for SNRK-AS1 Gene

Sequence variations from dbSNP and Humsavar for SNRK-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000250293 -- 43,351,725(-) C/T non_coding_transcript_variant
rs1000301110 -- 43,351,578(-) T/C intron_variant
rs1000388663 -- 43,350,882(-) G/C intron_variant
rs1000635277 -- 43,349,855(-) T/C non_coding_transcript_variant
rs1002250436 -- 43,348,691(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNRK-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3596011 CNV gain 21293372

Additional Variant Information for SNRK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNRK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNRK-AS1 Gene

Disorders for SNRK-AS1 Gene

Additional Disease Information for SNRK-AS1

No disorders were found for SNRK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNRK-AS1 Gene

Publications for SNRK-AS1 Gene

No publications were found for SNRK-AS1 Gene.

Products for SNRK-AS1 Gene

Sources for SNRK-AS1 Gene

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