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Aliases for SNORD99 Gene

Subcategory (RNA class) for SNORD99 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD99 Gene

  • Small Nucleolar RNA, C/D Box 99 2 3 5
  • HBII-420 3

External Ids for SNORD99 Gene

ORGUL Members for SNORD99 Gene

Previous GeneCards Identifiers for SNORD99 Gene

  • GC01U901247
  • GC01M028782
  • GC01M028783
  • GC01M028785
  • GC01M028906
  • GC01M027158
  • GC01M028914
  • GC01M028927
  • GC01M028937
  • GC01M028580

Summaries for SNORD99 Gene

GeneCards Summary for SNORD99 Gene

SNORD99 (Small Nucleolar RNA, C/D Box 99) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD99 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD99 Gene

Genomics for SNORD99 Gene

GeneHancer (GH) Regulatory Elements for SNORD99 Gene

Promoters and enhancers for SNORD99 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J028581 Enhancer 0.7 ENCODE 650.7 +0.9 858 0.3 PAF1 SMAD5 ZNF10 ZBED1 BACH1 ZNF2 ZNF48 ZSCAN9 RFXANK POLR2A GC01M028584 GC01M028623 GC01M028629 GC01M028630 SNORD99 PIR59489 SNORA61 RPA2 GMEB1 TRNAU1AP
GH01J028579 Enhancer 0.7 ENCODE 650.7 +1.3 1298 0.3 ZNF48 RFXANK POLR2A ZBTB48 NFATC1 ZNF600 IKZF2 PAF1 SMAD5 ZNF189 GC01M028623 SNORD99 RPA2 GMEB1 TRNAU1AP
GH01J028580 Enhancer 0.6 ENCODE 650.7 +0.5 478 0.2 PAF1 POLR2A SMAD5 BACH1 ZNF600 ELF1 ZNF2 SUPT5H GC01M028584 GC01M028623 GC01M028629 GC01M028630 SNORD99 PIR59489 SNORA61 PHACTR4 RPA2 GMEB1
GH01J028577 Enhancer 0.6 ENCODE 650.7 +1.6 1648 0.1 ZBED1 POLR2B POLR2A IKZF1 ZNF600 ZBTB33 IKZF2 SUPT5H GC01M028623 SNORD99 TRNAU1AP
GH01J028551 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.8 +25.7 25651 2.5 HDGF PKNOX1 SMAD1 ARNT ARID4B NEUROD1 SIN3A YBX1 DMAP1 ZBTB7B TRNAU1AP PRDX3P2 SNORA61 SNORD99 SNORA73B SNHG3 RCC1 PHACTR4 RAB42 DNAJC8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD99 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD99 gene promoter:
  • AREB6
  • TGIF
  • AML1a
  • CP2
  • SEF-1 (1)
  • Meis-1b
  • Meis-1a
  • Meis-1
  • STAT5A
  • GR-beta

Genomic Locations for SNORD99 Gene

Genomic Locations for SNORD99 Gene
chr1:28,578,743-28,578,822
(GRCh38/hg38)
Size:
80 bases
Orientation:
Minus strand
chr1:28,905,255-28,905,334
(GRCh37/hg19)
Size:
80 bases
Orientation:
Minus strand

Genomic View for SNORD99 Gene

Genes around SNORD99 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD99 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD99 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD99 Gene

Proteins for SNORD99 Gene

Post-translational modifications for SNORD99 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD99 Gene

Domains & Families for SNORD99 Gene

Gene Families for SNORD99 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD99: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD99 Gene

Function for SNORD99 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD99 Gene

Localization for SNORD99 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD99 Gene

Pathways & Interactions for SNORD99 Gene

SuperPathways for SNORD99 Gene

No Data Available

Interacting Proteins for SNORD99 Gene

Gene Ontology (GO) - Biological Process for SNORD99 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD99 Gene

Drugs & Compounds for SNORD99 Gene

No Compound Related Data Available

Transcripts for SNORD99 Gene

mRNA/cDNA for SNORD99 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD99 Gene

No ASD Table

Relevant External Links for SNORD99 Gene

GeneLoc Exon Structure for
SNORD99
ECgene alternative splicing isoforms for
SNORD99

Expression for SNORD99 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD99 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD99 Gene:

SNORD99
genes like me logo Genes that share expression patterns with SNORD99: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD99 Gene

Orthologs for SNORD99 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD99 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD99 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD99 34
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD99 34
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord99 34
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD99 34
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD99 34
  • 72 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD99 34
  • 69 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD99 34
  • 69 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD99 34
  • 71 (a)
OneToOne
Species where no ortholog for SNORD99 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD99 Gene

ENSEMBL:
Gene Tree for SNORD99 (if available)
TreeFam:
Gene Tree for SNORD99 (if available)

Paralogs for SNORD99 Gene

No data available for Paralogs for SNORD99 Gene

Variants for SNORD99 Gene

Sequence variations from dbSNP and Humsavar for SNORD99 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000600385 -- 28,579,545(-) G/A upstream_transcript_variant
rs1001430380 -- 28,579,825(-) A/G upstream_transcript_variant
rs1001785906 -- 28,578,999(-) T/G upstream_transcript_variant
rs1002031777 -- 28,578,426(-) A/G downstream_transcript_variant
rs1002736529 -- 28,580,757(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD99 Gene

Variant ID Type Subtype PubMed ID
nsv545916 CNV gain 21841781

Additional Variant Information for SNORD99 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD99

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD99 Gene

Disorders for SNORD99 Gene

Additional Disease Information for SNORD99

No disorders were found for SNORD99 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD99 Gene

Publications for SNORD99 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD99 Gene

Sources for SNORD99 Gene

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