Aliases for SNORD98 Gene

Data sources for SNORD98 Gene:

RNA type for SNORD98 Gene

snoRNA

Aliases for SNORD98 Gene

External Ids for SNORD98 Gene

Previous GeneCards Identifiers for SNORD98 Gene

  • GC10U900647
  • GC10P070185
  • GC10P070514
  • GC10P064516

Summaries for SNORD98 Gene

GeneCards Summary for SNORD98 Gene

SNORD98 (Small Nucleolar RNA, C/D Box 98) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD98 Gene

  • Small nucleolar RNA SNORD98

Additional gene information for SNORD98 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD98 Gene

Genomics for SNORD98 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD98 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J068541 Enhancer 1 Ensembl ENCODE 10 -212.4 -212422 2.6 NCOR1 IKZF1 JUND CEBPA BHLHE40 FOXA2 SAP130 TAL1 ZNF316 USF2 CCAR1 DDX50 ENSG00000221184 SNORD98 DNA2 HSALNG0078530 TMEM14DP piR-30876-018 TET1 SLC25A16
GH10J068348 Enhancer 0.9 Ensembl ENCODE 9.6 -406.5 -406499 0.7 ZNF654 ZNF580 CTCF DEK TRIM22 RAD21 SMC3 MYC MAX SCRT1 HSALNG0078515 CCAR1 SIRT1 DDX50 HNRNPH3 HERC4 ENSG00000221184 SNORD98 DNA2 hsa-miR-5095-043
GH10J068550 Enhancer 0.8 ENCODE 10 -204.2 -204213 0.2 NCOR1 ZNF654 MYC ZNF223 ZNF10 REST TRIM22 CTCF IRF2 ELF1 SLC25A16 CCAR1 DDX50 ENSG00000221184 SNORD98 TET1 TMEM14DP
GH10J068553 Enhancer 0.7 Ensembl ENCODE 10 -201.7 -201671 1 IKZF1 RELA TAL1 HDAC2 TEAD4 GATA2 PHF21A MLLT1 DNA2 SLC25A16 CCAR1 DDX50 ENSG00000221184 SNORD98 TET1 TMEM14DP
GH10J068347 Enhancer 0.4 dbSUPER 9.6 -407.4 -407396 0.8 CTCF ZNF362 ZNF507 ZNF121 HSALNG0078515 CCAR1 DNA2 SIRT1 DDX50 HNRNPH3 HERC4 ENSG00000221184 SNORD98 PBLD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD98 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD98 gene promoter:
  • CBF(2)
  • FOXD3
  • Nkx3-1
  • Nkx3-1 v1
  • Nkx3-1 v2
  • Nkx3-1 v3
  • Nkx3-1 v4
  • NRF-2
  • p53
  • STAT5A

Genomic Locations for SNORD98 Gene

Latest Assembly
chr10:68,755,172-68,755,238
(GRCh38/hg38)
Size:
67 bases
Orientation:
Plus strand

Previous Assembly
chr10:70,514,929-70,514,995
(GRCh37/hg19 by Entrez Gene)
Size:
67 bases
Orientation:
Plus strand

Genomic View for SNORD98 Gene

Genes around SNORD98 on UCSC Golden Path with GeneCards custom track
SNORD98 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORD98 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD98 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD98 Gene

Proteins for SNORD98 Gene

Post-translational modifications for SNORD98 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD98 Gene

Domains & Families for SNORD98 Gene

Gene Families for SNORD98 Gene

genes like me logo Genes that share domains with SNORD98: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD98 Gene

Function for SNORD98 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD98 Gene

Localization for SNORD98 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD98 gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORD98 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD98: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD98 Gene

Pathways & Interactions for SNORD98 Gene

PathCards logo

SuperPathways for SNORD98 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD98 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD98: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD98 Gene

Drugs & Compounds for SNORD98 Gene

No Compound Related Data Available

Transcripts for SNORD98 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD98 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000062C164_9606 snoRNA 67 5

RefSeq: NR_003076,

Ensembl: ENST00000636377 (view in UCSC) ,

Rfam: RF00607,

snoDB: SNODB287,

snOPY: Homo_sapiens300472,

URS0001BC9CB3_9606 snoRNA 67 1

Rfam: RF00607,

SNORD98 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD98 Gene

No ASD Table

Relevant External Links for SNORD98 Gene

GeneLoc Exon Structure for
SNORD98

No data available for mRNA/cDNA for SNORD98 Gene

Expression for SNORD98 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD98 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD98

genes like me logo Genes that share expression patterns with SNORD98: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD98 Gene

Orthologs for SNORD98 Gene

Evolution for SNORD98 Gene

ENSEMBL:
Gene Tree for SNORD98 (if available)
TreeFam:
Gene Tree for SNORD98 (if available)
Alliance of Genome Resources:
Additional Orthologs for SNORD98

No data available for Orthologs for SNORD98 Gene

Paralogs for SNORD98 Gene

No data available for Paralogs for SNORD98 Gene

Variants for SNORD98 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORD98 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORD98 Gene

Variant ID Type Subtype PubMed ID
esv2759764 CNV loss 17122850
nsv1047983 CNV gain 25217958
nsv1052569 CNV gain 25217958
nsv551435 CNV loss 21841781

Additional Variant Information for SNORD98 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD98
Leiden Open Variation Database (LOVD)
SNORD98

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD98 Gene

Disorders for SNORD98 Gene

Additional Disease Information for SNORD98

No disorders were found for SNORD98 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD98 Gene

Publications for SNORD98 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD98 Gene

Sources for SNORD98 Gene