Aliases for SNORD97 Gene

Subcategory (RNA class) for SNORD97 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD97 Gene

  • Small Nucleolar RNA, C/D Box 97 2 3 5
  • SNORD97 2 5
  • U97 2 3
  • SNODB150 177
  • RF01291 168

External Ids for SNORD97 Gene

Previous GeneCards Identifiers for SNORD97 Gene

  • GC11U900717
  • GC11M010823
  • GC11M010510
  • GC11M010802
  • GC11M010804
  • GC11M010825
  • GC11M010846
  • GC11M010817
  • GC11M010853
  • GC11M010806
  • GC11M010808
  • GC11M010810

Summaries for SNORD97 Gene

GeneCards Summary for SNORD97 Gene

SNORD97 (Small Nucleolar RNA, C/D Box 97) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD97 include Vertical Talus, Congenital and Amyotrophic Lateral Sclerosis 1.

Rfam classification for SNORD97 Gene

  • Small nucleolar RNA SNORD97

Additional gene information for SNORD97 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD97 Gene

Genomics for SNORD97 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD97 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J010803 Enhancer 0.3 ENCODE 600.7 -1.7 -1701 0.2 POLR2A SNORD97 lnc-ZBED5-4 lnc-ZBED5-5 EIF4G2 lnc-ZBED5-3 CTR9
GH11J010855 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -56.5 -56495 4.6 SP1 HNRNPL TEAD4 REST TFE3 RFX1 SOX13 IKZF1 ZNF692 POLR2A ZBED5-AS1 ZBED5 EIF4G2 lnc-ZBED5-2 CTR9 ENSG00000246308 SNORD97
GH11J010898 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.4 -98.3 -98284 5.2 CREB1 HNRNPL PRDM10 ZNF629 ZNF512 LEF1 IKZF1 ZNF692 JUND FOXA1 ENSG00000250041 ZBED5 CTR9 ZBED5-AS1 EIF4G2 AMPD3 SNORD97 piR-32214-079 CSNK2A3
GH11J010893 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 9.9 -91.6 -91647 4.9 PRDM10 ZNF629 CTCF ZNF692 EP300 CEBPB SP1 ATF3 MAFF FOS ZBED5-AS1 ZBED5 EIF4G2 ENSG00000246308 SNORD97 AMPD3 ENSG00000250041 piR-32214-079 CSNK2A3
GH11J010906 Enhancer 1 Ensembl ENCODE dbSUPER 10.4 -106.3 -106293 4.6 PRDM10 IKZF1 CTCF NFRKB FOXA1 PKNOX1 MGA MAX NFIC WT1 ZBED5-AS1 ZBED5 EIF4G2 SNORD97 ENSG00000250041 RF00017-861 CSNK2A3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD97 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD97 gene promoter:
  • aMEF-2
  • AP-1
  • AREB6
  • E47
  • MEF-2
  • Meis-1
  • Nkx2-2
  • Nkx2-5
  • TBP
  • TFIID

Genomic Locations for SNORD97 Gene

Genomic Locations for SNORD97 Gene
chr11:10,801,467-10,801,608
(GRCh38/hg38)
Size:
142 bases
Orientation:
Minus strand
chr11:10,823,014-10,823,155
(GRCh37/hg19)
Size:
142 bases
Orientation:
Minus strand

Genomic View for SNORD97 Gene

Genes around SNORD97 on UCSC Golden Path with GeneCards custom track
SNORD97 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD97 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD97 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD97 Gene

Proteins for SNORD97 Gene

Post-translational modifications for SNORD97 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD97 Gene

Domains & Families for SNORD97 Gene

Gene Families for SNORD97 Gene

genes like me logo Genes that share domains with SNORD97: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD97 Gene

Function for SNORD97 Gene

Phenotypes From GWAS Catalog for SNORD97 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD97 Gene

Localization for SNORD97 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD97 gene
Compartment Confidence
plasma membrane 1
nucleus 1
cytosol 1

Gene Ontology (GO) - Cellular Components for SNORD97 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD97: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD97 Gene

Pathways & Interactions for SNORD97 Gene

PathCards logo

SuperPathways for SNORD97 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD97 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD97: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD97 Gene

Drugs & Compounds for SNORD97 Gene

No Compound Related Data Available

Transcripts for SNORD97 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD97 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003B57B1_9606 snoRNA 142 6

HGNC: 32760,

RefSeq: NR_004403,

Ensembl: ENST00000459187 (view in UCSC) ,

Rfam: RF01291,

snoDB: SNODB150,

ENA: AY349597.1:1..142:ncRNA,

SNORD97 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD97 Gene

No ASD Table

Relevant External Links for SNORD97 Gene

GeneLoc Exon Structure for
SNORD97

No data available for mRNA/cDNA for SNORD97 Gene

Expression for SNORD97 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD97

SOURCE GeneReport for Unigene cluster for SNORD97 Gene:

Hs.723086
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD97 Gene

Orthologs for SNORD97 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD97 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD97 31
  • 99 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORD97 31
  • 93 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORD97 31
  • 85 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORD97 31
  • 84 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm23262 31
  • 66 (a)
OneToOne
Chicken
(Gallus gallus)
Aves SNORD97 31
  • 65 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia SNORD97 31
  • 54 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii SNORD97 31
  • 48 (a)
OneToOne
Species where no ortholog for SNORD97 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD97 Gene

ENSEMBL:
Gene Tree for SNORD97 (if available)
TreeFam:
Gene Tree for SNORD97 (if available)

Paralogs for SNORD97 Gene

No data available for Paralogs for SNORD97 Gene

Variants for SNORD97 Gene

Additional dbSNP identifiers (rs#s) for SNORD97 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD97 Gene

Variant ID Type Subtype PubMed ID
nsv483000 CNV loss 15286789

Additional Variant Information for SNORD97 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD97

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD97 Gene

Disorders for SNORD97 Gene

MalaCards: The human disease database

(3) MalaCards diseases for SNORD97 Gene - From: DISEASES

Disorder Aliases PubMed IDs
vertical talus, congenital
  • cvt
amyotrophic lateral sclerosis 1
  • als1
autosomal recessive non-syndromic intellectual disability
  • autosomal recessive mental retardation
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD97

genes like me logo Genes that share disorders with SNORD97: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD97 Gene

Publications for SNORD97 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD97 Gene

Sources for SNORD97 Gene