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Aliases for SNORD96B Gene

Subcategory (RNA class) for SNORD96B Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD96B Gene

  • Small Nucleolar RNA, C/D Box 96B 2 3 5
  • U96b 3

External Ids for SNORD96B Gene

ORGUL Members for SNORD96B Gene

Previous GeneCards Identifiers for SNORD96B Gene

  • GC0XU900658
  • GC0XM109355
  • GC0XM109468
  • GC0XM099088

Summaries for SNORD96B Gene

GeneCards Summary for SNORD96B Gene

SNORD96B (Small Nucleolar RNA, C/D Box 96B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD96B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD96B Gene

Genomics for SNORD96B Gene

GeneHancer (GH) Regulatory Elements for SNORD96B Gene

Promoters and enhancers for SNORD96B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ110268 Enhancer 0.2 ENCODE 13 -43.5 -43505 0.2 SNORD96B AMMECR1-IT1 GC0XM110227 AMMECR1
GH0XJ110174 Enhancer 0.2 Ensembl 12.6 +49.9 49862 0.8 LOC101928589 SNORD96B MIR3978 TMEM164
GH0XJ110229 Enhancer 1.1 Ensembl ENCODE 0.7 -4.8 -4832 1.4 ATF1 SIN3A YY1 POLR2B FOS ATF7 SP3 YY2 NCOA1 ZNF592 GC0XM110227 SNORD96B AMMECR1-IT1 AMMECR1
GH0XJ110236 Enhancer 0.5 ENCODE 0.4 -12.9 -12930 2.4 FOXK2 CBFA2T3 CBFA2T2 ZNF24 GC0XM110227 SNORD96B AMMECR1-IT1 AMMECR1
GH0XJ110282 Enhancer 0.9 Ensembl ENCODE 0.2 -60.0 -60004 4.6 JUN MAX CEBPG BATF FOSL1 FOSL2 FOS RFX1 STAT1 CEBPB AMMECR1-IT1 SNORD96B GC0XM110227 AMMECR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD96B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD96B gene promoter:
  • Evi-1
  • Lmo2
  • Nkx6-1
  • C/EBPalpha
  • Cdc5
  • CBF-B
  • CBF-A
  • CBF(2)
  • CUTL1
  • NF-Y

Genomic Locations for SNORD96B Gene

Genomic Locations for SNORD96B Gene
chrX:110,224,985-110,225,063
(GRCh38/hg38)
Size:
79 bases
Orientation:
Minus strand
chrX:109,468,213-109,468,291
(GRCh37/hg19)
Size:
79 bases
Orientation:
Minus strand

Genomic View for SNORD96B Gene

Genes around SNORD96B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD96B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD96B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD96B Gene

Proteins for SNORD96B Gene

Post-translational modifications for SNORD96B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD96B Gene

Domains & Families for SNORD96B Gene

Gene Families for SNORD96B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD96B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD96B Gene

Function for SNORD96B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD96B Gene

Localization for SNORD96B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD96B Gene

Pathways & Interactions for SNORD96B Gene

SuperPathways for SNORD96B Gene

No Data Available

Interacting Proteins for SNORD96B Gene

Gene Ontology (GO) - Biological Process for SNORD96B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD96B Gene

Drugs & Compounds for SNORD96B Gene

No Compound Related Data Available

Transcripts for SNORD96B Gene

mRNA/cDNA for SNORD96B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD96B Gene

No ASD Table

Relevant External Links for SNORD96B Gene

GeneLoc Exon Structure for
SNORD96B
ECgene alternative splicing isoforms for
SNORD96B

Expression for SNORD96B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD96B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD96B Gene:

SNORD96B
genes like me logo Genes that share expression patterns with SNORD96B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD96B Gene

Orthologs for SNORD96B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD96B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD96 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD96 34
  • 94 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORD96 34
  • 89 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snord96a 34
  • 84 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD96 34
  • 72 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD96 34
  • 63 (a)
OneToMany
Species where no ortholog for SNORD96B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD96B Gene

ENSEMBL:
Gene Tree for SNORD96B (if available)
TreeFam:
Gene Tree for SNORD96B (if available)

Paralogs for SNORD96B Gene

No data available for Paralogs for SNORD96B Gene

Variants for SNORD96B Gene

Sequence variations from dbSNP and Humsavar for SNORD96B Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000022298 -- 110,224,512(-) G/T downstream_transcript_variant
rs1003042286 -- 110,225,782(-) G/A upstream_transcript_variant
rs1003064895 -- 110,225,326(-) A/G upstream_transcript_variant
rs1007226550 -- 110,225,753(-) G/C upstream_transcript_variant
rs1010918345 -- 110,225,688(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD96B Gene

Variant ID Type Subtype PubMed ID
nsv518116 CNV gain 19592680

Additional Variant Information for SNORD96B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD96B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD96B Gene

Disorders for SNORD96B Gene

Additional Disease Information for SNORD96B

No disorders were found for SNORD96B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD96B Gene

Publications for SNORD96B Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD96B Gene

Sources for SNORD96B Gene

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